Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01767 ATGGCTTCCATCAGCCAAACCATTTCCTCAACACCGGATCACTTAGTGAATCCGGCTAATCCTCTCTATTTGCATCCTGGTGAAAACCTAGCTTTGGTGCTTGTTTCCCCTCTTCTCACAGAGAGCAATTTCCATAAATGGGAGAGAGACATGGTTGTTGCCCTTGAAACCAAAAACAAAGAGCGCTTCATTCATGGCACTCTTCCCTGTCCACCCATCACAGACCCCTTGTATGAAGCTTGGCGCAGATCTAATCGCATGGTAATGTCATGGCTCACTCGTTCCATGACCCCTTCCATCAAGCAATCCCGTGATCTCAAGGATCGCTTCTCTCATGTTGACAAATTTCGGATTTTTGACCTTCAGGATCAGATTCTTGCTTGTCGCCAAGGTGAATCTACTGTTTCTGAATACTATACCAAGTTGAAGATCTTGTGGAAAGAAATGGAGCTTTATCGTTGTGTGTTGACCTGTACCTGTTTGACACCTTGTGTCTGTGGCCTCCTTTCTAAACTTCACAAAGAACGCGAGGATGATTATGTGATTCGCTTTCTTCGGGGTCTCAATGACAATTATGCCCAAGTTCGTTCCCAAATCATGATGCTAGACCCCATGCCTTCCATTGTTAAAACATTTTCCATGATCCTTCAGCATGAACATGAATTTATTGGCATTCTTCCGAAGCCCTTTGTTCCCGATTCCTTGGCTTTTGCTGCTCTCTCCACTGACCCACGTTTTCCTTCTTTCACAAGGCCCACTTCTGCTACTAGCAAGACCATTTCCAGGAACAATAAATTCTGTGAGCATTGCAAGAAAACCAATCATACCATCGAGAATTGCTACTTTCGCATTGGTTTTCCTGTTGGTTACAAGAAGTCAAAACCCACGACTAAAACTTCTGCCAGTTTGGTTACTGTGGATCCTTCTGCTTCTTCTCAGCCATTGAATTTGGATGGTAATCCCACCAATGATCAGTTCACTTTCTCTAAGGATCAGTATCAAGCGATCTTGGCCTTGCTCCAACATACTAAGGATCATTCATCCTCTGTGAATCATGCTTCTGTTCATAATTTAGGTACATCCTTTTCTTTTGCTCATTGGATTATTGATAGTGGTGCTACTGACCACATTTGTCCAATTAAATCTTTATTTCATAACCTTCACCCCATTACACCAATCCATATCAATCTGCCTAATCACACTATTGTCATTGCCTCATTTTCAGGGACTATTCATATAGGTGCTTTACTACTTGTTGATGTGCTTTTTGTACATGAATTCTCTAGGTCTCACCTCACGATGATTGGAGCAACTAGGAAGGTTGATGGTATTTTTCATGAAACCTCATGCCTTGAATCTCCTCAACAAAATGAGATATTTGAGCGCAAACATCAACATATTTTGAATGTAGCTCGCGCCTTACTTTTCCAATCTCACTTGCCTTCTGTTTTCTGGTCATACGCAATTAAACATGTTGTCCATCTCATTAATAGGCTCCCTACTCCATTTCTGAAACATCAATCTCCTTATCAATATGTTTTTGGAAGCCTCCTTGATTTTCAAAAACTTAGAGTTTTTGGTTGTTTAGCTTTTTCTAACACTATCATGGCTGGTAGAACTAAGTTAGACAAACGTGCCTCTAAGTGCATTTTTCTTGGTTTTAAACCTGGGGTTAAAGGGTATCTTTTATATAATCTTCATAACAAAAATTTTCTTGTGTCCCGCAATGTCATTTTTTATGAGTCTCATTTTCCTTATGCTCATGAGTCTCAATCCATTTCTCATCACCACAACACTGGTCTTACTGCATCACAACAGATTTTTTATTCTTTAATTGCTTTTGATATACCTGTTTCTGGTGTTTCCTCTCTCAATACTGGTACTACTGATGTTGAACCAGTTATGCAATTCAATAATGATTCTAACAATGTTGTGCAAACCATTAATCCTCTTCCTAGAGTTTCCAATCGACAGAGGAAGCCTCCTGCTTACTTGTCTACGTATGATTGCCCTACTCTTTCCTCTACTAACATTTCATATAGTACTCCTTATCCATTACATTCATATTTATCATATTCCAGTTGTTCTAATTCTCACACTGCTTTTTGCATGTCCTTATCTGCCACTATCGAGCCATCTTCCTTTAAGGAAGCTTGCCAGCATGATCACTGGCAGCAGGCTATGATTGCGGAAATACAAACTCTGTTTCTAATTTCCATTATTGTCTCTCGCCATTGGTCTTTATATCAACTTGACGTTGATAACGCCTTTTTACATGGTGATTTAAATGAAGATGTTTACATGAAACCTCCCCCGGGATTGCTTCTTCCTGAACCTCATCTAGTTTGTAAATTGCACAAGTCTCTTTACGGCCTTAGACAAGCTTCTCGACAGTGGAATTCCAAGCTTACATCTGCATTAATTTCCTATGGGTTCTCACAGAGTTCTGCTGATCATTCTCTGTTTACCTATCATTCCTCTAACTCTTTTATTGCCTTATTGGTTTATGTTGATGATATAGTGCTTACTGGAGATAACATGCAGGCCATTAATGATGTCAAACAATTTTTACATCATAAATTCAGCATCAAAGATTTAGGTTCTCTCAAATTCTTTCTTGGTTTTGAGGTTGCTCGATCACAACAAGGCCTTGTCCTAAATCAAAGAAAATATTGTTTGGAAATCTTGTCCGAATTTGGTCTAACTAGTTGCAAACCTGCCACTTCTCCTTCGAATCCCACTATTAAGCTGAAGGATGATGAAGGTGATCTTGTTTCAGATCCCACTGCTTACAGAAGATTGATTGGTAAGCCACAATACTTAACTAATACTCGTCCAGACATCTCCTTTGTTGTTCAACAAGTTAGCCAATTCATGTCCAAGCCACGTCAATCTCATCTCCATGCTGCTTTCAGAATCTTGAGATACCTCAAAAGTTGTCCAGGTCTTGGTTTATTTTATCCTTCCTCCAACCCTCACCGAATTCAAGCTTTTTCGGATTCCGATTGGGCTACTTGTTCCCTCACTCGCAAGTCCATCACGGGATATTGTGTCTTTTATGGCCACTGTCTTATTTCTTGGAAATCTAAGAAACAATCCACGGTTTCTAGAAGCTCTACTGAAGCTGAATATAGAGCTTTGGCTTCTGTTGCTTGTGAACTACAGTGGTTAAAATATATTGCTGATGACTTGCGCCTTAAAATTCCTCTTCCTTTTCCCACCTTTTGTGATAATCAGTCTGCAATTCAGCTAGCCAAGAATCCATCCTTTCATGAACGAACCAAACATATCGAAGTGGATTGTCATCTCATACGTGCTAAGATTCTTGATGGTCTCATTGTCATTTCACATGTTCCTTCCAAGCATCAATTGGCAGATATGTTAACTAAGTCTCTTTATCCTGGACCTTTTCATGATAATTTGTCCAAAATGGGTTTGCTGAACATTCACCACCCATCTTGA 3462 0.3983 MASISQTISSTPDHLVNPANPLYLHPGENLALVLVSPLLTESNFHKWERDMVVALETKNKERFIHGTLPCPPITDPLYEAWRRSNRMVMSWLTRSMTPSIKQSRDLKDRFSHVDKFRIFDLQDQILACRQGESTVSEYYTKLKILWKEMELYRCVLTCTCLTPCVCGLLSKLHKEREDDYVIRFLRGLNDNYAQVRSQIMMLDPMPSIVKTFSMILQHEHEFIGILPKPFVPDSLAFAALSTDPRFPSFTRPTSATSKTISRNNKFCEHCKKTNHTIENCYFRIGFPVGYKKSKPTTKTSASLVTVDPSASSQPLNLDGNPTNDQFTFSKDQYQAILALLQHTKDHSSSVNHASVHNLGTSFSFAHWIIDSGATDHICPIKSLFHNLHPITPIHINLPNHTIVIASFSGTIHIGALLLVDVLFVHEFSRSHLTMIGATRKVDGIFHETSCLESPQQNEIFERKHQHILNVARALLFQSHLPSVFWSYAIKHVVHLINRLPTPFLKHQSPYQYVFGSLLDFQKLRVFGCLAFSNTIMAGRTKLDKRASKCIFLGFKPGVKGYLLYNLHNKNFLVSRNVIFYESHFPYAHESQSISHHHNTGLTASQQIFYSLIAFDIPVSGVSSLNTGTTDVEPVMQFNNDSNNVVQTINPLPRVSNRQRKPPAYLSTYDCPTLSSTNISYSTPYPLHSYLSYSSCSNSHTAFCMSLSATIEPSSFKEACQHDHWQQAMIAEIQTLFLISIIVSRHWSLYQLDVDNAFLHGDLNEDVYMKPPPGLLLPEPHLVCKLHKSLYGLRQASRQWNSKLTSALISYGFSQSSADHSLFTYHSSNSFIALLVYVDDIVLTGDNMQAINDVKQFLHHKFSIKDLGSLKFFLGFEVARSQQGLVLNQRKYCLEILSEFGLTSCKPATSPSNPTIKLKDDEGDLVSDPTAYRRLIGKPQYLTNTRPDISFVVQQVSQFMSKPRQSHLHAAFRILRYLKSCPGLGLFYPSSNPHRIQAFSDSDWATCSLTRKSITGYCVFYGHCLISWKSKKQSTVSRSSTEAEYRALASVACELQWLKYIADDLRLKIPLPFPTFCDNQSAIQLAKNPSFHERTKHIEVDCHLIRAKILDGLIVISHVPSKHQLADMLTKSLYPGPFHDNLSKMGLLNIHHPS 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01767 1153 CDD RNase_HI_RT_Ty1 996 1132 - -
Vimu10g01767 1153 SUPERFAMILY DNA/RNA polymerases 735 1102 IPR043502 -
Vimu10g01767 1153 Pfam Retrotransposon gag protein 90 190 IPR005162 -
Vimu10g01767 1153 PANTHER GAG-POL-RELATED RETROTRANSPOSON 442 735 - -
Vimu10g01767 1153 Pfam gag-polypeptide of LTR copia-type 25 71 IPR029472 -
Vimu10g01767 1153 Gene3D - 426 525 IPR036397 GO:0003676
Vimu10g01767 1153 SUPERFAMILY Ribonuclease H-like 442 526 IPR012337 -
Vimu10g01767 1153 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 736 910 IPR013103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01767 Vimu-Chr10 24787732 24792014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01767 736 1107 Receptor kinase-like Gene Family AT4G23160 47.480 1.92e-110 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01767 - - vra:106758365 668.307