Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01742 ATGAATTTCCCATATCTTACTAGCTTCTCCGAACGTGTCGTTGCTCCTCTTCATGCCACAGTTCCCACTACAATTATCAGGGGCAATAAGGCGGAGAGTTTTGCAATTGAAGGGCGTAATCTGAGATTCTCATTCACGACGAGGCAAACGCAGGATGTGCCTGTTCTTAGGGATTGTTCGATTCGCATTCCTTGCGGGCAGTTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCTACCCTCTTGAAGATTTTGGCTGGTCTCTTGATCCCAACTTCAGGAACAGTGAATGTGAATGGACCTAAAAGTTTCGTTTTCCAAAATCCAGATCATCAGGCAACAGGAACCTCCTGCCTCAGTCGTAGGGAGCACCACCAGATAAGCATGGCTTCTTTTTCCTCTGCATCTCGATGGGTGGTGCTGCCTACTGTGGATGCTGATGTTGCATTTGGTCTTGGTAAGATCGATTTGACTCACGATGAAGTCAGGTCTAGGGTGTCGAGAGCTTTGCATGCTGTAGGGCTGACTGACTACATGAAGAGATCTGTCCAAACTCTTAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTAGCAGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACCACATTCTTAGATGAAACTGACCAGTATGACACATTCAAGCTGACAGAAGAATGCCATGGGGACAGTGTCTATTTGAGCTTTCGGAATTCTAAACAAACAGTTAACTTAACATGGCTTCAGTTTTCGTGCTTGCAGTTGAATATGTTCATACTAGAAGTTACGGCATTATGGGTCACCCATCGTTTGGAAGAACTAGAGTATGCAGATGGTGCCATCTACATGGAGGATGGAAAAGTTGTCATGCATGGAGATGCCGCTAGCATTAGGAGTTTCATTGAAGCCAGACAATCTGCTTATATAAACCAGATTAATTCTTAA 960 0.451 MNFPYLTSFSERVVAPLHATVPTTIIRGNKAESFAIEGRNLRFSFTTRQTQDVPVLRDCSIRIPCGQFWMLLGPNGCGKSTLLKILAGLLIPTSGTVNVNGPKSFVFQNPDHQATGTSCLSRREHHQISMASFSSASRWVVLPTVDADVAFGLGKIDLTHDEVRSRVSRALHAVGLTDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQYDTFKLTEECHGDSVYLSFRNSKQTVNLTWLQFSCLQLNMFILEVTALWVTHRLEELEYADGAIYMEDGKVVMHGDAASIRSFIEARQSAYINQINS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01742 319 Gene3D - 33 318 IPR027417 -
Vimu10g01742 319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 303 IPR027417 -
Vimu10g01742 319 CDD ABC_cobalt_CbiO_domain1 37 292 IPR015856 GO:0005524|GO:0016020|GO:0055085
Vimu10g01742 319 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 315 IPR003439 GO:0005524
Vimu10g01742 319 SMART AAA_5 65 292 IPR003593 GO:0016887
Vimu10g01742 319 Pfam ABC transporter 56 214 IPR003439 GO:0005524
Vimu10g01742 319 ProSitePatterns ABC transporters family signature. 187 201 IPR017871 GO:0005524|GO:0016887
Vimu10g01742 319 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 265 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01742 Vimu-Chr10 24309312 24312553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01742 36 297 Calmodulin-binding Proteins AT2G36910 26.573 4.08e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01742 - - pvu:PHAVU_009G150700g 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01742 10 24309312 24312553 Vimu10g01742 10 24309312 24312553 ECH