Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01737 ATGGAAGATATGAAGATAAAATCCCTTTCTTCCTTCTTTCTTCTGTTTCTCATAGCCATTACTCACACACATGTTTGTTTAGCAGAATGTGATAACGTGAAGGACTATTGCCCGACAAGTACGAAACCCCAAAAGCAAGCCATATTCATCAATGGCCTCTCCTGTGAGAACCCAGATAACACAAGTGCCCATGATTTCAAGAGCAACGAACTAAGCAAACCTGGTTCCAGGGACGATTTTGGTGCCCTGGTTAAAATTGTTACTGCTTCAAAGTTTGTGGGGCTGAACACTCTTGGCCTTGCGATTGGTAGAAGTGACATTGAAGTGGATGGGCTTGTGAACATCCACAATCACCCCAGAGCCACCGAGATGGTCTATGTGAACCAAGGTAGGTTGCTGGCTGCGTTTCTCAACACCCAAAACCAGCTCTTCCAAAAGACTCTCAATGCTGGTGACGTCTTTATCATTCCCAAGGGCTTGTTCCATTTCTTCCTCAACCGTGGTGAACAAGTTGCAACTTTGTTCTCAGTCTTCAACGCCCAAAATCCAGGGCTAGGATCACTCTCTCCCCAACCCTCTCAATCTGAAAACACACTTCAATCGGTTCAGAAGATAAAGATCAAGCTCAATTCACTCTCTCACTCACAATTTCATGCTGATACTGATTTCACTTTGCAATTGCTTGATATCGTTTCTGACCATTAA 705 0.4397 MEDMKIKSLSSFFLLFLIAITHTHVCLAECDNVKDYCPTSTKPQKQAIFINGLSCENPDNTSAHDFKSNELSKPGSRDDFGALVKIVTASKFVGLNTLGLAIGRSDIEVDGLVNIHNHPRATEMVYVNQGRLLAAFLNTQNQLFQKTLNAGDVFIIPKGLFHFFLNRGEQVATLFSVFNAQNPGLGSLSPQPSQSENTLQSVQKIKIKLNSLSHSQFHADTDFTLQLLDIVSDH 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01737 234 Gene3D Jelly Rolls 28 219 IPR014710 -
Vimu10g01737 234 PRINTS Germin signature 146 166 IPR001929 GO:0030145
Vimu10g01737 234 PRINTS Germin signature 116 136 IPR001929 GO:0030145
Vimu10g01737 234 PRINTS Germin signature 179 194 IPR001929 GO:0030145
Vimu10g01737 234 ProSitePatterns Germin family signature. 111 124 IPR019780 GO:0030145
Vimu10g01737 234 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 27 197 - -
Vimu10g01737 234 SMART Cupin_1_3 69 211 IPR006045 -
Vimu10g01737 234 Pfam Cupin 80 200 IPR006045 -
Vimu10g01737 234 SUPERFAMILY RmlC-like cupins 74 194 IPR011051 -
Vimu10g01737 234 CDD cupin_OxOx 31 190 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01737 Vimu-Chr10 24291459 24294296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01737 32 185 Miscellaneous Gene Families AT5G20630 36.538 2.79e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01737 - - var:108332215 444.891