Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01736 ATGGTCCCACACCACCCCTACTTTAATATTTTCTTAATTTTTAATTTTCCTCTTTCTTACACCCCACCCTTCCCTGTTGTCAAACGCGCTCACCGATATGCAAATAGTAGTGCAACACGCACTTGCTTCCACCTTCACCCTAACCTATCACATCACAGAACCACCACTCTCTGCTTATTTTCTCCACACGCTACCACCACAAACTCTTCCAACGTTAACAAAATCAAAACCATCAACATCTGTTCCATTCATAGCATGGAATCCGACAAAACAACCTTTGGAGCTCTGCTCCTCGCCACCTTCAAGCGACCCTCCTTCGCCCTCCTGTTCCTCCTCTTCACCCTCCTCACCTTTCTCTCCCTCCACCTTCCCGCCAGGTCCGTCTGGCTCCTCGCGGGTCCCCACCCTGGGCCTCATCCCACAACATGCGCAACCTTCTTCCGCCACTTCCCGCCCAGGAAGGTCGTCATGTCCATCAAGGACTTCGGCGGCGTCGGCGACGGCACCACTTCCAACACTCAATCGTTCCGGAGGGCGATTCAGTACATGCAGCGCTTCCAGAACCGCGGCGGGGGCCAGCTGAATATCCCCGCTGGAACCTGGCTCACCGGCAGCTTCAATCTCACGAGTAATTTCACGCTCTTTCTTGAACACGGTGCCGTTATTCTCGCTTCACAGGACCCGAAAGAATGGCCAATAATTGAGGCATTGCCATCTTATGGAAGAGGGAGAGAGAGGCTTGGAGGAAGACATATTAGCCTTATTCATGGAAATGGCATTAGCAATGTTGTTATTACAGGACAAAATGGGACAGTTGATGGTCAAGGAAAAATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCATACAAGAGGGCACCTCCTTGAACTAATGAACTCGGATAATATTCTCATATCAAACCTCACCTTTCGAAATTCTCCTTTTTGGACCATCCATCCTGTTTATTGCAGAAATGTTGTGATCAAAGGGATGACAATCTTGGCTCCCCTTAATGCTCCAAATACTGATGGCATAGACCCAGATTCAAGTTCCAATGTATGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTTGCCATTAAGAGTGGTTGGGATCAATATGGAATCAACGTGGCCCATCCGTCCACAAATATTGTAGTGAGGAGAATATCAGGCACTACTCCCACTTGTTCTGGAGTAGGCATAGGTAGTGAAATGTCTGGTGGAATTTCAAATATCACAATTGAGAATTTGCATGTGTGGGATTCTGCAGCTGGTGTTCGGATAAAATCTGACAAGGGCAGAGGAGGCTATGTAGCTAATGTTTCTATAAGTGACATAAGAATGGAGAGAGTCAAGATACCCATTAGGTTCAGTAGAGGTTCAAATGACCATCCTGATGATGGGTGGGATCCAAAAGCTATTCCTAGATTCAAAGATATTTTGATCAGTAATGTGGTCAGTATAAATGCAACAAAAGCCCCAGTTTTGGAAGGTGTAGAGGGTTCATCATTTGAAGGCTTATGCTTCAAAAACATTACCCTGCATGGTGTTGCCTTATCCAAAAGATGGCGTTGTGAATATGTTTCTGGTTTTGCCACCGAGGTTTTCCCTGTTCCTTGTCTCGAGTTGCAGAACAATAGCTATTCATCCTGGTGTTCACCTTCCTGA 1680 0.4637 MVPHHPYFNIFLIFNFPLSYTPPFPVVKRAHRYANSSATRTCFHLHPNLSHHRTTTLCLFSPHATTTNSSNVNKIKTINICSIHSMESDKTTFGALLLATFKRPSFALLFLLFTLLTFLSLHLPARSVWLLAGPHPGPHPTTCATFFRHFPPRKVVMSIKDFGGVGDGTTSNTQSFRRAIQYMQRFQNRGGGQLNIPAGTWLTGSFNLTSNFTLFLEHGAVILASQDPKEWPIIEALPSYGRGRERLGGRHISLIHGNGISNVVITGQNGTVDGQGKMWWELWWNRTLEHTRGHLLELMNSDNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSSNVCIEDNYIESGDDLVAIKSGWDQYGINVAHPSTNIVVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYVANVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAIPRFKDILISNVVSINATKAPVLEGVEGSSFEGLCFKNITLHGVALSKRWRCEYVSGFATEVFPVPCLELQNNSYSSWCSPS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01736 559 Pfam Glycosyl hydrolases family 28 253 533 IPR000743 GO:0004650|GO:0005975
Vimu10g01736 559 SUPERFAMILY Pectin lyase-like 147 548 IPR011050 -
Vimu10g01736 559 SMART pbh1 324 350 IPR006626 -
Vimu10g01736 559 SMART pbh1 413 434 IPR006626 -
Vimu10g01736 559 SMART pbh1 301 323 IPR006626 -
Vimu10g01736 559 SMART pbh1 385 407 IPR006626 -
Vimu10g01736 559 SMART pbh1 351 383 IPR006626 -
Vimu10g01736 559 SMART pbh1 442 463 IPR006626 -
Vimu10g01736 559 Gene3D - 147 536 IPR012334 -
Vimu10g01736 559 PANTHER PECTIN LYASE-RELATED 118 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01736 Vimu-Chr10 24282066 24286138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01736 86 557 Glycoside Hydrolase AT4G33440 66.457 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01736 - - vra:106780727 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01736 10 24282066 24286138 Vimu10g01736 10 24282066 24286138 ECH