Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01705 ATGACAACCATTGCCGATCTTAATGATAAGTGGGCTGCATATGCTGGTCCTGGGGGATGGAATGATCCAGATATGTTGGAAGTTGGAAATGGTGGAATGACTTACCAGGAATACCGTGCTCACTTCAGCATCTGGGCTTTAGCGAAGGTGTTGTTGATCTTAGCCCCTACTTCCTATATTTTCTCCCTGGCATTCATCTGTGCTGAATTTGTCATCTCTCGATATCAGTCTGCACCGCTATTGATCGGCTGTGATGTAAGAAATTTGACTGCTGAAACACTTGAGATTTTAAGCAATGCAGAAGTCATTGCCATAAATCAAGGTCACTCACTTGGAGTCCAGGGAAGGAAAGTTCAAGCTTCTGATGTAGATGGTTGCAGACAGGTTCATTGTAGTTGTGCTTCTGATGTTGATTTAATTGGATTAGATTTGATCAGATTACTCCGGGTTTGGGCCGGTCCTTTGTCAGGAAATCGATTGGCTGTTGCTTTCTGGAATCGATGCTCAAAAGTTGCCACTATAACAGCTTCATGGGAAGCACTTGGGCTTGAATCTGGAATTCGTGTTTCTGTGAGGGATCTGTGGCAGCACAAGTTAGTAGCTGAAGATGCAGTGTCATCGTTCAGTGCTGGAGTTGATATCCACGACTGTCAACTGTACATTTTCACTCCATTTACAGTATCTCGCTCTGTAGAGTAA 699 0.4392 MTTIADLNDKWAAYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALAKVLLILAPTSYIFSLAFICAEFVISRYQSAPLLIGCDVRNLTAETLEILSNAEVIAINQGHSLGVQGRKVQASDVDGCRQVHCSCASDVDLIGLDLIRLLRVWAGPLSGNRLAVAFWNRCSKVATITASWEALGLESGIRVSVRDLWQHKLVAEDAVSSFSAGVDIHDCQLYIFTPFTVSRSVE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01705 232 PRINTS Glycosyl hydrolase family 27 signature 36 57 IPR002241 GO:0004553|GO:0005975
Vimu10g01705 232 PRINTS Glycosyl hydrolase family 27 signature 15 34 IPR002241 GO:0004553|GO:0005975
Vimu10g01705 232 Pfam Alpha galactosidase C-terminal beta sandwich domain 148 221 IPR041233 -
Vimu10g01705 232 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 1 224 IPR002241 GO:0004553|GO:0005975
Vimu10g01705 232 Gene3D Aldolase class I 1 59 IPR013785 -
Vimu10g01705 232 Pfam Alpha galactosidase A 6 54 IPR002241 GO:0004553|GO:0005975
Vimu10g01705 232 FunFam Alpha-galactosidase 146 225 - -
Vimu10g01705 232 Gene3D Aldolase class I 72 109 IPR013785 -
Vimu10g01705 232 Gene3D - 112 225 IPR013780 -
Vimu10g01705 232 SUPERFAMILY (Trans)glycosidases 2 107 IPR017853 -
Vimu10g01705 232 SUPERFAMILY Glycosyl hydrolase domain 148 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01705 Vimu-Chr10 23523409 23526775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01705 1 230 Glycoside Hydrolase AT3G56310 58.696 8.32e-88 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01705 K07407 - gmx:100784072 314.309