Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01701 TTCTATTTTGCTGGAGATCTAAGTTATACATCTGCAGCTATGGACGATAAGAATGAAAATTTGCTACCATCCCCACCTAGCCAGCTGTTATCAATTGATGAGGAAATTTGGAAGATGATTGAAGAGAGGGCCCAAGAGATACTATGGACAATTGAACCAAATCTATTATCTGAGGAGAAAAGAAAGGATGTTATTGATTATGTTCGGAGCCTAATAGGAGATTACTATGGAGCAGATGTCTTGCCATTCGGTTCTGTTCCGCTAAAAACTTACCTTCCTGATGGTGATATTGACTTGACAGCTCTTAGTCACGAAGATACAGAGGAGGATTTGGCCATAACAGTTTGCAGTATACTTGAAAGAGAAGATGACCCTGAATACGAAATAAAAGACATACAACATATACCTGCACAGGTCCAGCTTGTGAAATGTACAGTGAAAAATATACCAGTTGACATCTCTTTCAATCAGATGATTGGATTCTATACTATACACTTTTTGGAGCAGGTTGATCAGCTTGTTGGAAAGAACCATCTTTTCAAACGCAGTATTATCTTAATCAAAGCTTGGTGCTATTATGAAAGCCGAATTCTTGGTGCACACCATGGACTGTTATCAACGTATGCGATAGAAATACTGGTCTTGTATATCGTCAATCGTTTTCATTCGTCACTGCGTGGTCCTCTGGAGGTTCTATACATATTCTTGGACTACTACGGTTCATTTGACTGGGACCGTAATTATGCTAGTATATGGGGTCCAAAAGCCTTATCCTCACTTCCTGAAATTGTTGAAACACCAGAATGTGATCAGAGTGGATTCTTGCTCAAGAAAGAGTTTCTCAAAAAGCACAGGGATATGTGCTCTTCTAGCATAAGAGCATCGGAGACAGTGACTCCTGAATTTCCCGTTAAGCTGATGAACATCTTGGATCCTCTAAGAAATGATAACAATGTTGGTCGTTGTGTCAACTTAGCCAATTTACATCGAATAAGGTTAGCTCTTTCCTATGGTGGTCGAAGGCTGAAGCAGGCCCTCACACTTCCAGGAGAAAACATGGGTTCAGCACTTGAGAAGTTTTTCTTCTGTACTTTGGAAAGGAATGGGAAAGGAGAAAGGGCAGATGTTGACATTCCTGTTTGTCCATTTGGTACTGGAAGATCTGAAGGGTCTGTCCTGGATGGAGACCATGCCAGTTACTCTTTTGACTCACAATATGTTCAGCTATATCCCAATTATTCCATGCCAGTAACAACTGTGCATTCCAATTCTCCATCTCCACCTTCTCACGATGACATGCTTGCCCTATCAACCCGGCAAAACTGGAGTGGAGGTGATTTCCTGACATCACAACAAAACTGGAGCATGTTTTATCAAAGTGGTAGCAATGTATACATCCCAGGACCGACACTGTATCATCCAACTTACAGCCTTGATGAAGGAATAAAATCACGAGGAACAGGCACATATATACCTGACTTGAACTATTACTCCTACTGGGATATACGCGTAAATGAGAACTGGCCAAGGAAAATTCCCATTGTAAAGAACAATGCATATCCAAAATCACATCCTACAGAGCAACTAGTGGAGGAGGTTCATTCTGAGACAAATTTGAATGCTAATTCAACGCCGTTTGAGTTCACAAAAGAAGACTTCCCTCTTCTTCCAGGCATTCCCAAGGCTACACTTCCAAAACAAGCACAAGCATCTGCTTCAATAGCAAAGGCATGTTCTGAGACAGACAAGGGTGGTCATTCTATGTTGTCTGAGCTCTCAAGTGAAGATTTGTCCCCCCTTCTTCCATGCTTTCGCAAGGATACACCACCATTGGAAAATGATCATACTGAGACGCACATGGGTAGCAATTCGCAGTCTTTTGAGCTCTCAAACGAAGATTTCCCCCTTCTTCCAAAGCTTTCTTCTGAGACACGCAAGGATGGCAAGTCAAAGTCATTCGAGCTCTCAAAGAAAGATTTTCCTCTTCTTCGATCTTCACTGAAGACTGTCCCGTCAGAGTCTGCAAAGTTGACCAAGCAAGCTAAGAGTTTCACATCCTCTAAACTGAAAAACATGGAGTTTGGAACTTTCAAGTATTCAGATTCACTGAAGGTACAAAGTTTGCCAACAAAGAATAAGAAAGAAGATTGTGGTGTTTCATTATCTCAAAAAACTGTAATGGTGGTCCCGAAGGTGGCAAGTAAGAGGCAAGAGGAATCTCACCAGAAGATGGGTTGA 2238 0.4151 FYFAGDLSYTSAAMDDKNENLLPSPPSQLLSIDEEIWKMIEERAQEILWTIEPNLLSEEKRKDVIDYVRSLIGDYYGADVLPFGSVPLKTYLPDGDIDLTALSHEDTEEDLAITVCSILEREDDPEYEIKDIQHIPAQVQLVKCTVKNIPVDISFNQMIGFYTIHFLEQVDQLVGKNHLFKRSIILIKAWCYYESRILGAHHGLLSTYAIEILVLYIVNRFHSSLRGPLEVLYIFLDYYGSFDWDRNYASIWGPKALSSLPEIVETPECDQSGFLLKKEFLKKHRDMCSSSIRASETVTPEFPVKLMNILDPLRNDNNVGRCVNLANLHRIRLALSYGGRRLKQALTLPGENMGSALEKFFFCTLERNGKGERADVDIPVCPFGTGRSEGSVLDGDHASYSFDSQYVQLYPNYSMPVTTVHSNSPSPPSHDDMLALSTRQNWSGGDFLTSQQNWSMFYQSGSNVYIPGPTLYHPTYSLDEGIKSRGTGTYIPDLNYYSYWDIRVNENWPRKIPIVKNNAYPKSHPTEQLVEEVHSETNLNANSTPFEFTKEDFPLLPGIPKATLPKQAQASASIAKACSETDKGGHSMLSELSSEDLSPLLPCFRKDTPPLENDHTETHMGSNSQSFELSNEDFPLLPKLSSETRKDGKSKSFELSKKDFPLLRSSLKTVPSESAKLTKQAKSFTSSKLKNMEFGTFKYSDSLKVQSLPTKNKKEDCGVSLSQKTVMVVPKVASKRQEESHQKMG 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01701 745 CDD NT_PAP_TUTase 60 167 - -
Vimu10g01701 745 Gene3D - 158 353 - -
Vimu10g01701 745 PANTHER PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY 23 377 - -
Vimu10g01701 745 MobiDBLite consensus disorder prediction 607 629 - -
Vimu10g01701 745 SUPERFAMILY Nucleotidyltransferase 29 198 IPR043519 -
Vimu10g01701 745 Pfam Nucleotidyltransferase domain 65 147 IPR002934 GO:0016779
Vimu10g01701 745 Gene3D Beta Polymerase, domain 2 53 157 IPR043519 -
Vimu10g01701 745 SUPERFAMILY PAP/OAS1 substrate-binding domain 179 347 - -
Vimu10g01701 745 MobiDBLite consensus disorder prediction 615 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01701 Vimu-Chr10 23471069 23475178 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01701 - - pvu:PHAVU_009G141900g 1130.93