Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01628 ATGGCTCCTCCAAGAGGTCGTGGTGGTTCTGGTGGTGGATTTAGGGGTGGTAGGGGTGACAGAGGTAGAGGAAGAGGTGGTGGGGGAAGAGGTGGAGACAGAGGTACGCCCTTCAAAGCAAGAGGTGGAGGCAGAGGTGGTGGTGGCCGTGGAGGCGGCAGGGGTGGTGGCCGTGGCGGTGGCAGAGGTGGAATGAAGGGTGGGAGCAAAGTCGTAGTTCAGCCGCATAGGCATGAAGGAATTTTCATTGCCAAGGGTAAAGAAGACGCACTTGTAACTAAGAATCTTGTTCCTGGCGAAGCTGTTTACAATGAAAAAAGGATTACTGTCCAGAATGAAGATGGTTCCAAAGACGAATATAGAATATGGAATCCTTTTCGTTCAAAGTTGGCTGCTGCCATCCTTGGAGGAGTTGACAACATCTGGATTAAACCTGGAGCCAGAGTCCTTTACTTAGGAGCTGCTTCTGGGACAACTGTTTCTCACGTGTCTGACCTTGTTGGCCCCTCAGGAGTTGTCTATGCAGTAGAGTTTTCTCATAGAAGTGGTCGTGATTTGGTCAACATGGCAAAAAAACGTACGAATGTTATACCCATTATTGAAGATGCTAGACATCCAGCTAAATACAGAATGTTGGTTGGAATGGTCGATGTCATTTTTTCTGATGTTGCTCAGCCTGATCAGGTTAAAATTTGTTTTCCTAGGAACAGAAATGTGGCTATTGCTAGTTTTATGGAGTGGGGAGTCCAAAAGCTAGAATTGGCTTTCCGGTGTGTCGATTCTCTTCTATATTTGCCGGAATGTATTCCATTTGAAGATAAAGCTCCTGAAAAGAATCAAGCTAGGATTTTGGGGTTGAATGCTTCATATTATCTCAAAGCAGGTGGTCATTTTGTTATTTCAATCAAGGCTAACTGCATAGACTCAACGGTACCTGCTGAGGCAGTGTTTGAAAGCGAAGTGAACAAGTTGAAGGCGGATCAATTCAAACCATTCGAGCAAGTGACCCTTGAACCATTTGAGAGGGACCATGCCTGTGTGGTTGGAGGATATAGAATGCCCAAGAAGAAAAAAGAAACTGCTTAA 1086 0.4567 MAPPRGRGGSGGGFRGGRGDRGRGRGGGGRGGDRGTPFKARGGGRGGGGRGGGRGGGRGGGRGGMKGGSKVVVQPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDGSKDEYRIWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDLVGPSGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQVKICFPRNRNVAIASFMEWGVQKLELAFRCVDSLLYLPECIPFEDKAPEKNQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKETA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01628 361 Gene3D Phosphorylase Kinase; domain 1 68 123 - -
Vimu10g01628 361 FunFam Mediator of RNA polymerase II transcription subunit 36a 124 175 - -
Vimu10g01628 361 Pfam Fibrillarin 272 352 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu10g01628 361 Pfam Fibrillarin 73 233 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu10g01628 361 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 87 352 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu10g01628 361 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 10 357 - -
Vimu10g01628 361 Gene3D Vaccinia Virus protein VP39 260 353 IPR029063 -
Vimu10g01628 361 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 71 349 IPR029063 -
Vimu10g01628 361 ProSitePatterns Fibrillarin signature. 171 185 IPR020813 GO:0003723|GO:0006364|GO:0008168
Vimu10g01628 361 PRINTS Fibrillarin signature 146 167 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu10g01628 361 PRINTS Fibrillarin signature 171 188 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu10g01628 361 PRINTS Fibrillarin signature 119 138 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu10g01628 361 PRINTS Fibrillarin signature 91 110 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu10g01628 361 PRINTS Fibrillarin signature 196 225 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu10g01628 361 PIRSF Nop17p 267 355 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu10g01628 361 PIRSF Nop17p 39 264 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu10g01628 361 Gene3D Vaccinia Virus protein VP39 124 240 IPR029063 -
Vimu10g01628 361 MobiDBLite consensus disorder prediction 1 70 - -
Vimu10g01628 361 SMART Fibrillarin_2 73 353 IPR000692 GO:0003723|GO:0006364|GO:0008168
Vimu10g01628 361 FunFam Fibrillarin like 1 68 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01628 Vimu-Chr10 20280781 20283301 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01628 K14563 - gmx:100789137 479.559