Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01596 ATGAAGGATGTTGAAGTAGAAGGGACTTGGACACAAGAGAAGGTGGAAAAGCGAGCAAAAGAAGAGTCGCAACCATCGTTGGGCGGTGAAGCCACCTCCAGGCGGTGGACTCTTCAGAGAACTCTCTGTCCAACGCTCAAGCGTCAACGCTGGGGGCTGGTTTTAAGTGTCGAACCTACCGCCGGGCGGGAAACAATACTCGGACTTACCGTTTATTATTACTTGATACGATTCGGTACACTTGTCGGACCCTTAACAATAGACATGATTAGAGCTTCTGCATCCAACATCCGCCTCCGAGGGGTGAACAGAGTGTTTTTGCGTCTCCTTCTGCCAAAAGATACCCTCTCTCAGAAATTGGCCCAGGCTCACGAGACTGGCACTCAGTGCTGGAATTGCCGCTCACGGCGCCTGGTAGTGAACTCACTGAAGAGGCTGGCGCTCAACGGTAAAAGTGCCACTCAGCGGTGGCTGCGACACTTGTTTTTCCCTTCAACGTTGGCGCTTAAGCGTCGTCTAGAGAACTCCATAGCAAAGATAGCACTCAAGTGTGAAAATAGTGTTCAACGCCATTTTAGAGACCTGAAATCCGCGACCAAGAATTTCAAGGGCGACACATTGTTGGGTGAAGGTGGGTTTGGTAGAGTCTATAAGGGCTGGTTGAATGAGAAGAACCTTACCCTTCTGATCAACGAGCCCACTGCTGCCACACTTTCATATGGGATGAACAACAAGGAAGGTCTCATTGTAGTTTTTGATCTTGGAGGTGGAAGTTTTGACGTGTCCGTCTTAGAGATTTCTAACGGTGTTTTTGAGGTGAAAGTAACAAATGGTGACACCTTCTTGGGAGGAGAGGATTTTGATAATGCTTTATTGGACTTTCTAAGGCTCCGGGAAGCTGCTGAGAAAGCAAAAATAGAGCTTTCTTCAACATCCCAAACAAAAATCAATCTTCCTTTCATCACCGTCGATGCATCTAGTACAAAGCATTTGAATATCACATTGACTAGATCCAAGTTTGAGGCTTTAATAAACCACTTGATTGAAAGGACAAAAGCACCATGTAAGAGCTGCTTGAAGGATGCTAATGTATCTATCAAGGATGTTGATGAGGTTCTTCTTGTTGGAGGGATGACCCGTGTGCCTAAAGTCCAGGATGTGGTTTCACAGATCTTTGGAAAGAGTCCGGATGTTAAAGAGCTATTACTCCTCGACGTGACTCCACTTTCTTGGGGTATTGAGACTCTGGGTGTCTTAGAACCCCACCTACGTTGGCACATACTGAACCACAACTTAAAGTCACAGGCGCAGAGAGAACCCAATTGTTTGGAGGTGCAGGGTAAGGTGGCGATTTTCGATGGGGCGAGGAAGGAGAGGATGCACACCTCACATTAA 1395 0.4703 MKDVEVEGTWTQEKVEKRAKEESQPSLGGEATSRRWTLQRTLCPTLKRQRWGLVLSVEPTAGRETILGLTVYYYLIRFGTLVGPLTIDMIRASASNIRLRGVNRVFLRLLLPKDTLSQKLAQAHETGTQCWNCRSRRLVVNSLKRLALNGKSATQRWLRHLFFPSTLALKRRLENSIAKIALKCENSVQRHFRDLKSATKNFKGDTLLGEGGFGRVYKGWLNEKNLTLLINEPTAATLSYGMNNKEGLIVVFDLGGGSFDVSVLEISNGVFEVKVTNGDTFLGGEDFDNALLDFLRLREAAEKAKIELSSTSQTKINLPFITVDASSTKHLNITLTRSKFEALINHLIERTKAPCKSCLKDANVSIKDVDEVLLVGGMTRVPKVQDVVSQIFGKSPDVKELLLLDVTPLSWGIETLGVLEPHLRWHILNHNLKSQAQREPNCLEVQGKVAIFDGARKERMHTSH 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01596 464 Gene3D - 245 282 - -
Vimu10g01596 464 Gene3D - 351 397 - -
Vimu10g01596 464 PRINTS 70kDa heat shock protein signature 257 267 - -
Vimu10g01596 464 PRINTS 70kDa heat shock protein signature 369 385 - -
Vimu10g01596 464 FunFam Molecular chaperone DnaK 294 351 - -
Vimu10g01596 464 ProSitePatterns Heat shock hsp70 proteins family signature 2. 251 264 IPR018181 -
Vimu10g01596 464 ProSitePatterns Heat shock hsp70 proteins family signature 3. 372 386 IPR018181 -
Vimu10g01596 464 PANTHER HEAT SHOCK PROTEIN 70KDA 225 417 IPR013126 GO:0005524|GO:0140662
Vimu10g01596 464 Pfam Hsp70 protein 295 397 IPR013126 GO:0005524|GO:0140662
Vimu10g01596 464 MobiDBLite consensus disorder prediction 1 24 - -
Vimu10g01596 464 Gene3D Actin; Chain A, domain 4 283 294 - -
Vimu10g01596 464 Gene3D Actin; Chain A, domain 4 295 350 - -
Vimu10g01596 464 MobiDBLite consensus disorder prediction 1 33 - -
Vimu10g01596 464 SUPERFAMILY Protein kinase-like (PK-like) 190 254 IPR011009 -
Vimu10g01596 464 SUPERFAMILY Actin-like ATPase domain 246 397 IPR043129 -
Vimu10g01596 464 Gene3D Phosphorylase Kinase; domain 1 178 225 - -
Vimu10g01596 464 Gene3D - 227 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01596 Vimu-Chr10 18127078 18133879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01596 225 417 Miscellaneous Gene Families AT5G28540 40.816 4.69e-45 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01596 K04043 - gmx:100811003 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01596 10 18127078 18133879 Vimu10g01596 10 18127078 18133879 ECH