Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01589 ATGCTGCACAACAAGTCCTTTGTCAAGAAAACCAGGGCAGGCAAAGTCATGAAGCAAGTGCGGGAGCACTACCTGCGCGACGACATATACTGCGGCGCACCGTTTTGCACCGTTTGTGATACTTCGGGTGCTCGCCTCAACGCTTCTCCTTCCACCATCATTCTCGTCGTGGACACCAATGTCGTGCTCCACCAGATTGATTTGCTGGAGAATCAGGCATTCGATAACATTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAAAACAAGAATATGGCTGTTTACAACCGTATAAGAGCTCTCTGTAGCAATGCCACAAAGAAGTTCTATGTTTTTTCCAATGAGTACCACAGGGATACATATGTTAAGGAAATGAGTGGGGAAACTAAAAATGATAGGAATGATAGAGCTATCCGAGTGGCTACTCAGTGGTATCAGAACCATCTTGGTGGTGCAGTAAAGGTTTTGCTTATAACTAATGATAGAGAGAACAAAAGAAAGGCTAGTGAAGAGGGCATTTTTGCTGAAACAGTTGAGTCTTACGTCAAGTCTTTAGACCAACCTGATCTACTTGATCTTCTTGTGCGTCCTGCATCAGAAGATGTGAATATGGAAGACGTCGAAGATCTTAGACCATCCAAGAGGAAAGTGATCTATTCAGAGCATAAGCCAATGTCAGAAATCACTTCTGGTTTGCATCGTGGAATATATCATCAAGGCAAGCTTCGTGTAAACCGTTACAATCCATTTGAAGCATATGTTGGGAGGGAGAGCATTGGTGATGAAATAGTTATTTATGGGCGGTCAAACATGAACCGAGCTTTTGATGGAGATATTGTGGCAGCTGAACTTCTGCCGCAGGACCAGTGGCAAGAAGTCTCATCTCTATCTATAGCCGGTGAAGAAGATGAGAACGAGGATGAAGATGTTCATCTAGCTCCTAATAGTGCTGATGTTGCACCTAGGACTACTCCTCAGCAGGGTTCTTCTGGACAAGTAAATGCTGTACCCACCAATCGTCCTTCTGGTCGCATTGTTGGTATTATAAAGAGGAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTTTGCCTGCAGGGAGTGGTGGAATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATCCAAACACGCCAACTTGATAACCTTTTGGATAAGAGGATTATTGTTGCAGTTGATTCTTGGGATCGTCAGTCTAGATATCCATCTGGCCATTATGTGCGAACTATAGGGGAGATAGGTGATAGAGATACTGAAAGTGAGGTGGTTTTGATAGAAAATGATATAAATACTCGACCATTCTCTTCGCAAGTGCTGGCATGCTTGCCACCATTACCATGGTTGGTCTCTTCTGAAGATTTGTCCAATCCTATAAGGCAGGACTTGCGTCATGTACTTGTGTTCAGTGTCGATCCTCCAGGCTGCAAGGATATTGATGATGCACTCCATTGCCACGCACTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATTGCTGATGTTACAAATTTTGTTCATCCTGGTACTCCACTTGATGATGAGGCTTCCCAGAGGGGTACATCTGTCTACCTTGTGGAGCGGCGTATAGACATGCTTCCCAAACCTCTAACGGAGGACATATGTTCACTTCGTTCTGATGTGGAAAGGCTCGCATTCTCTGTCATTTGGGAAATGACACCTGAAGCAGACGTAATTTCCACCAGATATACAAAAAGTGTCATAAAATCTTCTGCAGCATTGTCTTATGTTGAAGCACAAGCAAGGATGGATGATAGTCGTCTGAGGGATCCCATTACTATAGGTTTGAGGAATATGAATAGTTTAGCTAAGAAAATGAGGCTGAGGCGCATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAAGTCAAATTTCAAATTGATACAGAGACTCATGACCCTCTTGATATTGGAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTGCTGCTAATGTTTCCGTTGCGCAACAAATTCTTAAAAGTTTTTCGTTATGCTCATTATTAAGGCGTCATCCAACACCAACCAGAGAGATGCTTGAACCCTTATTACAGACCGCTGCTGCAGTTGGCTTGCACTTGGATGTTTCATCATCAAAAGCATTGGCTGATTCTCTTGACCATGCTGTGGGCGATGATCCATACTTCAATAAATTAATCCGTATACTGGCAACTAGGTGCATGAGTCAGGCAGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCGGAATATCATCATTATGGGCTTGCAGCTCCTTTATATACCCATTTCACATCACCTATTAGAAGATATGCAGATGTCATTGTGCACAGGCTACTTGCTGCTGCTTTAGGAATATCAAAGTTACCGTCTGTATTTCAAGACAGACTCCAGCTCAGTAGTATTGCAGACAATTTAAATTATCGGCACAGGAATGCCCAGCATGCAGGGCGAGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAATAGGCCTACAGACACGGAGGCTAGAATAGTGAAAATAAGATCTAATGGCTTTTTTGTGTTTGTTCCCAAATATGGCATAGAAGGACCTATATATTTGACAAAAGCCGGAAAGGGAAATGGAGAATGGTATGTAGATGAGCAACAGCAGAAAATAAAAAGGATGGATGGTAGCCTTTCATACAGCGTTATGCAGACAGTCCAAATTCACATGGAAGTTGTGGAGCCTCAACCTAATCGTCCGAAACTTCAGCTTACTCTCATCTAG 2811 0.4337 MLHNKSFVKKTRAGKVMKQVREHYLRDDIYCGAPFCTVCDTSGARLNASPSTIILVVDTNVVLHQIDLLENQAFDNIVVLSIVLEEVKNKNMAVYNRIRALCSNATKKFYVFSNEYHRDTYVKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDRENKRKASEEGIFAETVESYVKSLDQPDLLDLLVRPASEDVNMEDVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGRESIGDEIVIYGRSNMNRAFDGDIVAAELLPQDQWQEVSSLSIAGEEDENEDEDVHLAPNSADVAPRTTPQQGSSGQVNAVPTNRPSGRIVGIIKRNWHSYCGSLEPMPLPAGSGGIAHALFVSKDRRIPKIRIQTRQLDNLLDKRIIVAVDSWDRQSRYPSGHYVRTIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWLVSSEDLSNPIRQDLRHVLVFSVDPPGCKDIDDALHCHALPNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADVISTRYTKSVIKSSAALSYVEAQARMDDSRLRDPITIGLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILKSFSLCSLLRRHPTPTREMLEPLLQTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMSQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAAALGISKLPSVFQDRLQLSSIADNLNYRHRNAQHAGRASVELHTLIYFRNRPTDTEARIVKIRSNGFFVFVPKYGIEGPIYLTKAGKGNGEWYVDEQQQKIKRMDGSLSYSVMQTVQIHMEVVEPQPNRPKLQLTLI 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01589 936 SMART PIN_9 53 166 IPR002716 -
Vimu10g01589 936 Pfam Rrp44-like cold shock domain 220 310 IPR033771 -
Vimu10g01589 936 FunFam Exosome complex exonuclease RRP44 homolog A 353 428 - -
Vimu10g01589 936 ProSitePatterns Ribonuclease II family signature. 771 795 IPR022966 -
Vimu10g01589 936 FunFam Exosome complex exonuclease RRP44 9 193 - -
Vimu10g01589 936 Gene3D - 853 936 IPR012340 -
Vimu10g01589 936 Gene3D - 208 313 - -
Vimu10g01589 936 FunFam Exosome complex exonuclease RRP44 homolog A 206 314 - -
Vimu10g01589 936 SUPERFAMILY PIN domain-like 54 187 IPR029060 -
Vimu10g01589 936 SMART RNB_2 473 804 IPR001900 GO:0003723|GO:0004540
Vimu10g01589 936 MobiDBLite consensus disorder prediction 319 337 - -
Vimu10g01589 936 CDD PIN_Rrp44-like 9 181 - -
Vimu10g01589 936 MobiDBLite consensus disorder prediction 316 337 - -
Vimu10g01589 936 Gene3D - 9 193 - -
Vimu10g01589 936 Pfam Dis3-like cold-shock domain 2 (CSD2) 375 442 IPR041505 -
Vimu10g01589 936 FunFam Exosome complex exonuclease RRP44 homolog A 853 936 - -
Vimu10g01589 936 Pfam RNB domain 473 802 IPR001900 GO:0003723|GO:0004540
Vimu10g01589 936 SUPERFAMILY Nucleic acid-binding proteins 431 849 IPR012340 -
Vimu10g01589 936 Pfam S1 domain 854 922 IPR033770 -
Vimu10g01589 936 SUPERFAMILY Nucleic acid-binding proteins 216 425 IPR012340 -
Vimu10g01589 936 Gene3D - 353 428 - -
Vimu10g01589 936 PANTHER RIBONUCLEASE 21 933 - -
Vimu10g01589 936 Pfam PIN domain 55 178 IPR002716 -
Vimu10g01589 936 SUPERFAMILY Nucleic acid-binding proteins 853 932 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01589 Vimu-Chr10 17943472 17961176 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01589 K12585 - gmx:100806652 1744.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01589 10 17943472 17961176 Vimu10g01589 10 17943472 17961176 ECH