Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01449 ATGGCGGCAATCAGCAGCATTCGTTTACAATTTCCACGGAATTTAAACGATTCAAGGAATAGGAATATGAGTTTTCATGCTCCGTGCAACATTACTAACGTGTTTAATAATAAACGAAGGATTTTGTCGGTGACCGCAAGTTATAGTGATAATCCTCGAAAAATGGACACTGCCAGCAGAGTAAATGTGAATGGAATACACGTGGCGGAGGCTCCTCTTCAAGCAGGAAGGTTGGCAAAGGAAAGTGCAGCAGATGAAGCTATTGTTACCAGCTTGCGTGGAAGGTTTGTGGAGGATAAGTTTGTATTTAGGCAAATTTTTGTTATCAGGTCTTACGAAATTGGACCAGATAAAACTGCCACAATGGAGACACTCATGAATTTTCTTCAGGAAACTGCTTTAAATCATGTGACTAGCTCTGGGATTGGGGGAGAAGGATTTGGAGCAACTCGCGAGATGAGCCTTCGAAAACTCATTTGGGTTGTCACTCGTATTCAACTTCAAGTTCAGAAATATAACAAATGGGGAGACGAAATTGAAGTTGACACTTGGGTCGATGCCGCTGGAAAGAATGGAATGCGAAGAGATTGGATAATCAGGGATCACTACACCAAAGAGATCATAACAAGAGCCACAAGCACATGGGTGATCATGAATAGACAAACAAGAAGACTTTCCAAGATCCCTGAAGAGGTTAAGCAAGAGCTTGTTCCTTTTTACCTAAACAGGCTTGCCGTTCCTACCGAAGAAGTAGATTGTGAGAAGATAGACAAACTCACTGATGACACAGCTGAGAGAATCCGATCTGGATTGGCCCCAAGGTGGAACGACATGGACGCTAACCAGCATGTCAACAATGTGAAATACATTGGATGGATTTTAGAGAGTGTGCCGATTGAAGTTCTAGAACATTATAATATGACAAGCATGACTTTGGAGTATCGACGTGAATGTACACAGTCAAATATTGTGGAATCCATGACGTGTCCAACAGCAAGTGTTTTGGAGTCCAACAATAATTCCAAGAACAGAAAACCGGACCTGCAATACACACACTTGCTTCGTCTGCAACATGATAAAGCAGACGTTGTTCGAGCCAGAACTGAGTGGAATTTCAAGCAAAACCAACAGTGA 1134 0.4224 MAAISSIRLQFPRNLNDSRNRNMSFHAPCNITNVFNNKRRILSVTASYSDNPRKMDTASRVNVNGIHVAEAPLQAGRLAKESAADEAIVTSLRGRFVEDKFVFRQIFVIRSYEIGPDKTATMETLMNFLQETALNHVTSSGIGGEGFGATREMSLRKLIWVVTRIQLQVQKYNKWGDEIEVDTWVDAAGKNGMRRDWIIRDHYTKEIITRATSTWVIMNRQTRRLSKIPEEVKQELVPFYLNRLAVPTEEVDCEKIDKLTDDTAERIRSGLAPRWNDMDANQHVNNVKYIGWILESVPIEVLEHYNMTSMTLEYRRECTQSNIVESMTCPTASVLESNNNSKNRKPDLQYTHLLRLQHDKADVVRARTEWNFKQNQQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01449 377 Pfam Acyl-ACP thioesterase 102 371 IPR002864 GO:0006633|GO:0016790
Vimu10g01449 377 Gene3D Hotdog Thioesterase 94 376 - -
Vimu10g01449 377 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 97 244 IPR029069 -
Vimu10g01449 377 CDD 4HBT 103 219 - -
Vimu10g01449 377 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 69 374 IPR045023 GO:0006633|GO:0016297
Vimu10g01449 377 FunFam Acyl-[acyl-carrier-protein] hydrolase 94 376 - -
Vimu10g01449 377 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 258 370 IPR029069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01449 Vimu-Chr10 15614867 15616693 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01449 94 373 Acyl Lipid Metabolism Gene Families AT1G08510 56.786 4.03e-112 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01449 K10781 - gmx:100814191 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01449 10 15614867 15616693 Vimu10g01449 10 15614867 15616693 ECH