Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01438 ATGGTGTTGAACAGCATGGAGAAGCCATCGTCGTCACGAAAATCGAGCACGAAGGTGAAAGCTTCAAGCGATGCGAACACCAGCTTGAGTATGCTGAATGAGGATCTTCTTCAGAACATTCTAGCGAGGCTTCCTGCTGTACCATTCGCTTCCGCAGCCTGCGTCAGCAAGGCATGGAACTCTCTCTGCAAACGAATCCTCTCTCGTCCCAAACTCTCTTCTGCGCTCTCTCTCAACCCTTCGCTCCCCGATGCTGTTAACGAGGTTGTACAAAGGGTTCTGTCGGAGCCAATTCGACCACATTTTGCTATTGCCAATACTGGAACTGGATTCTGCACTTCCAAGACTCTGCGGCTTATTAGACAGTCATTGGGATCTAATATTCCCGTTATTGTTACCGTGGCAAATGGTATTATTGGAAGGGATGCTATTACTGATGAATTTAAAGAGGTCAAATGGGGTGCCCTTTTTAGTGGCTTTGGTGAGGAAACATATGCAAAGTCTATAAACGAAGGCTTAGTTTTGACTGTTGGCTACTTGCCGGGATTGAAAGTCGAAGCTGTGCCGTTGCGGCGGCCACAAAAGTCATCTCAAGCACCTTGGGTCGACAATTTTATTAAGGATATTAAGGAATATTCCGCCATTGCCTCAGGTCGCCAGTTCCCTGTTGGGATCATATTGTTTGGAGAAGCAAGCAGTGACATGAAATTGGTTCTGGAGAAATTGGATTATGCTATGCCAATGGACACTATCGTTGTGGGTGATGAGAGAGGCTCCTTTGACTTTGTACACAAAAGTGGGAATGATTCTAGAATCATTTGTAGTAAAAGAGGAAACGTAGAAGCTGTTGCTCTGGTATTTGCTCAGGACAGAGACAGGTCTTTGGGAACTATTAGGTTTCATGTTGCATTGTCAGATGGTGTTTCAACTGTGGGTCCCAGATACAAGGCAGCCTCAGTTAGATCAAACACCACTGATTGTGCAACATGGCTAACTGCTAGGAGGGAAGGGCAACAAGAACTTCTTGATGGTCAGAGTATTCTACTTGATATCAATAATTTGCTGGACAATCATATTGAATCTCCTGATTTGTACATCGGGGTAATTAAACATAGGAAATTCTCCACGGGCGCAGAGAAGCCAATGCCGAGAACCTGTGTTGCATATCATGGAATTGTGGGAGGTGATGAAGAGTATCTGTATGTGGACGGCATCGGCATAAAAACAGGAGATTTCTTTCAATTCTACTTTTCAGATCCCAGCACTGCCTTAGCCTCATTAACCAAGGTCCATGAAGCCCTCAAGAATATTACACTGGAAAGAAATTCCAAGAGTTTCAAGGGTGATGGAGACAATGCTGCCAATGTTTTTGGAGGTCTAATTTTTGCTTGTTACGGCCGGGGAGAATCGTTCTTTGGTCGTCCCAATGTTGATAGCTCCCCTTTCTTGGAGAATTTTCCAGGAGTGCCTTTTTCTGGAATATTTTGTGGTGGAGAAATGGTACGCCCCTGTACCACTGTGATTGGTCAATGTGAAGGAGCAAGCCCCTTTAGTTGTTGTCTGCATGTCTACAGCACTGTCTACTTGGCAATGTCTTATACTCCTCCCTCTGTGGAAGATTAG 1623 0.4498 MVLNSMEKPSSSRKSSTKVKASSDANTSLSMLNEDLLQNILARLPAVPFASAACVSKAWNSLCKRILSRPKLSSALSLNPSLPDAVNEVVQRVLSEPIRPHFAIANTGTGFCTSKTLRLIRQSLGSNIPVIVTVANGIIGRDAITDEFKEVKWGALFSGFGEETYAKSINEGLVLTVGYLPGLKVEAVPLRRPQKSSQAPWVDNFIKDIKEYSAIASGRQFPVGIILFGEASSDMKLVLEKLDYAMPMDTIVVGDERGSFDFVHKSGNDSRIICSKRGNVEAVALVFAQDRDRSLGTIRFHVALSDGVSTVGPRYKAASVRSNTTDCATWLTARREGQQELLDGQSILLDINNLLDNHIESPDLYIGVIKHRKFSTGAEKPMPRTCVAYHGIVGGDEEYLYVDGIGIKTGDFFQFYFSDPSTALASLTKVHEALKNITLERNSKSFKGDGDNAANVFGGLIFACYGRGESFFGRPNVDSSPFLENFPGVPFSGIFCGGEMVRPCTTVIGQCEGASPFSCCLHVYSTVYLAMSYTPPSVED 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01438 540 Gene3D - 12 67 - -
Vimu10g01438 540 Pfam FIST C domain 406 501 IPR019494 -
Vimu10g01438 540 SUPERFAMILY F-box domain 27 64 IPR036047 GO:0005515
Vimu10g01438 540 SMART fbox_2 32 72 IPR001810 GO:0005515
Vimu10g01438 540 SMART FIST_C_2 347 503 IPR019494 -
Vimu10g01438 540 PANTHER F-BOX ONLY PROTEIN 22 21 535 - -
Vimu10g01438 540 Pfam FIST N domain 115 323 IPR013702 -
Vimu10g01438 540 Pfam F-box domain 29 68 IPR001810 GO:0005515
Vimu10g01438 540 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01438 - - gmx:100815778 947.962