Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01397 ATGCTGCTGAAATCATCTTTCACTCCCATTTTCTTGGTGCAAACCCCTAAATCCAAAGCTCAAAAACTTCACCACGCATTCACCAAAACCTTTTTCACTAACAGCACGCCACCCGTTCGACATAATGCCTCTCTCAACGTCGCCACCCCACCACCCGCTTCCTCCGCCTACATCCACCTCCCTTTCTGCCGGAAACGCTGCCACTATTGCGACTTTCCCATCGTAGCTCTCGGTTCCGCCTCCACCCAAACCCACCACGACCCGCGCGTCTCCAACTACATCGACTGGCTCTGCCGGGAAATCACCGCCACCAAAGTGGATCAACCCGCTTCCACCACGCCCCTCCAAACTGTCTATTTTGGCGGTGGGACGCCCTCTCTGGTGCCTCCTGCTATGGTTTCATCCGTTTTGGAGAGTCTGAGGGTGAAGTTTGGGCTTTGTAAGGACGCGGAAATATCGATGGAGATGGACCCCGGCACGTTTGGTGCTGAGAAGATGAGGAAGATGATAGCGTTGGGAGTGAATAGAGTGTCTTTGGGAGTTCAGGCGTTTCAGGAGGAGCTGTTGAGAGCGTGTGGGAGGGCACATGGGGTGCAAGAGGTTCATGAGGCTATTAGTGTTGTGAAGTCATGTGGGGTTGAGAATTGGAGTATTGATCTTATAGCTTCGTTGCCTCATCAGAGTTGTGAGATGTGGGAGGAAAGTTTAAGGCTCACCATTGAGTCACAACCTTCTCATGTGTCCGTTTATGACTTGCAAATTGAACAAGGAACAAAATTTGGACGATTTTATTTTCTGTTGCACTGCCGGCAACAAGGTTTTAAATTGCAGTTGCAATTGCCGCTTTGTAATGATCTTTTATATTGTGAGAAATTACGAACTGATACGCTTTACAAGCTGCCCTTTCTTACAGTGTCAAGAATCGCGATGAAACTGTCACTACAATTTGAAACCTTGATATCTGATTTGGCTGAGTACTCACCAGGGGAATTTCCAATGCCTTCTGAAACACAATCGGCTGAGTTCTATAAGATGGCTTCAAGAATGCTTACTGATGCGAATTACAACCATTATGAAATCAGCAGCTACTGCAAAAGTGGATACGAGTGCAAACACAACTTTATCTACTGGAAGAACGAGCCTTTCTATGCCTTTGGCCTTGGCTCTGCCAGTTTTGTTGGTGGGTTGAGGTATTCAAGACCAAGGAAGGTCAATGATTACATTAATTTTGTGCAGAATCTGGAAAATGGATTAGTAGATAGCTCTGGCGATGGTAACATTAATGCCAAGGACATGGCCATGGATGTGGTGATGCTGTCCCTAAGAACTGCACAAGGCCTAGACTTAAAGAGTTTCCAAGAATCATTTGGCAGCTCTGTTGTTTTGTCATTGCTAGAGGCTTATAAACCTTATGTTGAGAGTGGACTTGTGGTTTGCATGGATGAGCATAGGAGAACCATTATGGATGACCTTAACTATTCCTTTTTGTATAAAACTAACACAGAAAAGAGGGTGGCATACATAAGGCTAAGTGATCCAGAAGGTTTCCTCTTATCAAATGAGTTGATAGCCCTTGCTTTTGGGGTTATTGACTCTTGGAAGGCTTGCCCTCAGTACCAAGAAGCAAAAGCCACTTGA 1638 0.4597 MLLKSSFTPIFLVQTPKSKAQKLHHAFTKTFFTNSTPPVRHNASLNVATPPPASSAYIHLPFCRKRCHYCDFPIVALGSASTQTHHDPRVSNYIDWLCREITATKVDQPASTTPLQTVYFGGGTPSLVPPAMVSSVLESLRVKFGLCKDAEISMEMDPGTFGAEKMRKMIALGVNRVSLGVQAFQEELLRACGRAHGVQEVHEAISVVKSCGVENWSIDLIASLPHQSCEMWEESLRLTIESQPSHVSVYDLQIEQGTKFGRFYFLLHCRQQGFKLQLQLPLCNDLLYCEKLRTDTLYKLPFLTVSRIAMKLSLQFETLISDLAEYSPGEFPMPSETQSAEFYKMASRMLTDANYNHYEISSYCKSGYECKHNFIYWKNEPFYAFGLGSASFVGGLRYSRPRKVNDYINFVQNLENGLVDSSGDGNINAKDMAMDVVMLSLRTAQGLDLKSFQESFGSSVVLSLLEAYKPYVESGLVVCMDEHRRTIMDDLNYSFLYKTNTEKRVAYIRLSDPEGFLLSNELIALAFGVIDSWKACPQYQEAKAT 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01397 545 Pfam Radical SAM superfamily 58 238 IPR007197 GO:0003824|GO:0051536
Vimu10g01397 545 SUPERFAMILY Radical SAM enzymes 326 485 - -
Vimu10g01397 545 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Vimu10g01397 545 SUPERFAMILY Radical SAM enzymes 42 265 - -
Vimu10g01397 545 SFLD anaerobic coproporphyrinogen-III oxidase like 55 479 - -
Vimu10g01397 545 SFLD Radical SAM 55 479 IPR007197 GO:0003824|GO:0051536
Vimu10g01397 545 ProSiteProfiles Radical SAM core domain profile. 48 303 IPR007197 GO:0003824|GO:0051536
Vimu10g01397 545 SMART MiaB 53 278 IPR006638 GO:0003824|GO:0051536
Vimu10g01397 545 PANTHER COPROPORPHYRINIGEN III OXIDASE 39 532 IPR034505 -
Vimu10g01397 545 Gene3D tm_1862 like domain 61 266 IPR023404 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01397 - - pcin:129309581 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01397 10 14785791 14787662 Vimu10g01397 10 14785791 14787662 ECH