Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01377 ATGGCAGCTGCAAGTAGCATCATCTCCATCTCCTCTGCGTCACTCTTCACTCCAACAACACCTCAACCAAAAACCCATTGCCTCCTCAAACACACCAAGGACAATGATCATCTTCCAACATCATCCTTCACTACTCTTTCTTCTCTTAGGATATCAAAACCAACAACAACCTTTGGAGTCACTTCAACCACAAGGGTCAATGTTCCTCCTCGTAGGTTGAGTTGTTCGGCCTCTGCATCTTCCTCTTCCACTCTTCCCTCGGCTCTTCTATTTGACTGTGATGGAGTTCTTGTAGATACTGAAAAAGATGGTCACCGCATTTCTTTCAACCAAACCTTCCAAGAGAGAAATCTGGGCGTTACATGGGATGTAGACTTGTATGGAGAATTGCTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCATACTTTAACAAGACAGGTTGGCCTGCGAATGCCCCAGCAGGTGAACAAGAAAGAAAAGAATTCGTTGCTTCACTTCACAAACAAAAGACAGAACTATTCATGGCTCTTATTGAGAAAAAACTGTTGCCTCTTCGTCCAGGTGTTGCAAAGATTATCGATCAGGCTTTTTCTCAAGGAGTCCAAGTTGCAGTTTGCAGCACTTCCAATGAAAAGGCGGTCTCTGCAATAGTATCATTTTTGCTGGGACCTGAGAGAGCAGAAAAAATCAAGATATTTGCAGGAGATGTGGTTCCCCGTAAAAAGCCTGATCCAGCCATCTATCTGTTAGCAGCCAGCACTCTGGGTGTTGAACCTTCAAGATGTGTTGTGGTGGAGGACAGTGCCATAGGCCTAGCAGCTGCTAAAGCAGCTGGAATGACATGTATAGTAACAAAGAGCGGCTACACAGAAGATGAAGATTTCTTAAATGCAGATGCAGTGTTTGATTGCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCATTCTGTGGTAGCCTTCTTGAGAAGCAATATGTGAGCTAG 990 0.4424 MAAASSIISISSASLFTPTTPQPKTHCLLKHTKDNDHLPTSSFTTLSSLRISKPTTTFGVTSTTRVNVPPRRLSCSASASSSSTLPSALLFDCDGVLVDTEKDGHRISFNQTFQERNLGVTWDVDLYGELLKIGGGKERMTAYFNKTGWPANAPAGEQERKEFVASLHKQKTELFMALIEKKLLPLRPGVAKIIDQAFSQGVQVAVCSTSNEKAVSAIVSFLLGPERAEKIKIFAGDVVPRKKPDPAIYLLAASTLGVEPSRCVVVEDSAIGLAAAKAAGMTCIVTKSGYTEDEDFLNADAVFDCIGDPPEERFDLAFCGSLLEKQYVS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01377 329 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 84 312 - -
Vimu10g01377 329 Gene3D - 88 305 IPR023214 -
Vimu10g01377 329 PANTHER XYLULOSE-1,5-BISPHOSPHATE (XUBP) PHOSPHATASE 48 326 IPR044999 GO:0016787
Vimu10g01377 329 FunFam HAD family hydrolase 179 302 - -
Vimu10g01377 329 CDD HAD_CbbY-like 91 288 - -
Vimu10g01377 329 SUPERFAMILY HAD-like 87 308 IPR036412 -
Vimu10g01377 329 Gene3D Putative phosphatase; domain 2 100 184 IPR023198 -
Vimu10g01377 329 Pfam Haloacid dehalogenase-like hydrolase 89 285 IPR041492 -
Vimu10g01377 329 SFLD phosphoglycolate phosphatase 84 312 - -
Vimu10g01377 329 NCBIfam HAD-IA family hydrolase 168 285 IPR006439 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01377 Vimu-Chr10 14548226 14552044 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01377 - - pvu:PHAVU_009G169900g 583.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01377 10 14548226 14552044 Vimu10g01377 10 14548226 14552044 ECH