Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01376 ATGGCGGAGAAGTTTGGAGTAGCAGCAGTAGCAGAAGAGAGCTCTAACTCCAGGGTTCCTCACCATACGACAGCGAAGCTCGTCGTTTTGGCCGACCTCAACGTTGATCCTCCCGAAGCCGATGACGACGACTCTTCCCTTGTCCATCCTCCATCGATTGCAACTTTGGCGAATGATGAAAGTGGTCAAGATAAGAGTTTGTTGTCCAAAGACACTGATAGCATTGAAGGTGAAAGTAAAAAGTTGAACAAACTGGGCAGATGTCGTTCCAGACTTAGCAAGACAGAGTCTTCTCTTGATTGTGGAGCTGATGCAGATGGTGATCAACATGTTCAAGGACCTCCTTCATCTCGGGAGGAAAAAGTTAGCAGTGTGAAGACTGGCTTGGTTCATGTTGCAAAGAAGATGCCAAAAAATGCTCATGCTCATTTTATACTTGGCCTGATGTACCAAAGATTAAGCCAGCCTCAAAAGGCTGTATTGGCTTATGAGAAGGCAGAACAGATCTTGCTCAGGCCTGAGGCTGAGATTGATAGGCCAGAGTTGCTTTCGTTGGTTCAGATTCACCATGCACAGTGCCTGTTACTAGAAAGTTCATCAGAAAATAGTTCTGATAAAGAACTTGAGCCTCATGAACTTGAGGAGATTCTGTCTAAGCTGAAAGAGTCAGTGCAGTCAGATGTTAGACAGACAGCTGTATGGAACACATTGGGTTTTATCCTTCTTAAAACTGGTCGCGTGCAGAGTGCTATCTCAGTTTTGTCATCATTGTTGTCCATTGCACCAGAGAACTATGATTGCCTAGGAAATCTTGGGATAGCTTATCTTCAAATGCCTTGGGCTCTGACTACAACTGCTACCTTTTGTGGTGTGACTCTCCCTACGTTCTTATCACTTCGAGGATGGACAGTTACAATACGGGATATGGATACAGGAATACATGGACTCGGGAATATATCACAGGAGTCAATATTGGATAGCGTGGTCCAAAAGAAAGCTGCTAAACAACATATCAACATGTCCAAAATAGGAAATCTGCAAGAAGAGGTTGGCTGGACGGGATGGGTGGCAGAGGTTGATTGGCCAGATGAAGCCATTTCAGCTGAACAGAAAAGAAAGATGTGGAGTTTGTTAGAAGTTGCCATGCCACTGGAAGTGTGCACAGAAACCTCATTGGAGCAATTGATTTTGAAAGATCAAAATCATCCTGCAGCTTTGGTCAACTATGCTGCCCTTCTCTTGGGTAAATATGCTTCAGTTGTGGCAGGTCCAGGTGCAAGTGCCTCTGAAGGTGCCATGGCTGATCAGACCATGTCTGCAAAAGTTGCCAAGGAATGTTTGTTGGCTGCAATTAAAGCAGATAGCAAATCAGCCCATCTATGGGCAAATCTTGCATATGCATTTTCTATTAGTGGTGATCATCGAAGTTCCAGCAAGTGCTTGGAGAAGGCTGCCAAACTGGAGCCCAATTGCATGTCTACTCGATATGCTGTTGCTATCCATCGAATAAAGGAGGCAGAAAGATCACAAGATCGCAGTGAACTGCTTTCATGCGCTGGAAATGAAATGGCTTCTATAATAAGAGATGGTGATTCATCCCTGGTCGAGATTCCAATTGCATGGGCTGGGCTTGCCATGGTTCACAAGGCTCAGCATGAGATAGTGGCAGCATATGAAAGTGAACAGCATGGGTTAAGAGAGGTTGAAGAGCGTGCTCTTTGCAGTTTAAAGCAGGCTGTAGCAGAAGATCCAAATGATGCGGTGCAGTGGCATCAACTCGGCGTTCATAGTCTCTGTGCTCGGCAATTCAAAACATCACAAAAGTACTTCAAAGCTGCTGTTGCCTGTGACAGGGATTGCAGCTATGCGTGGTCTAACCTAGGTGTCTCACTTCAACTATCAGAGGAACCATCACAAGCTGAAGAAGTATACAAGAAAGCATTGTCTTTGGCAACAACTGAACAAGCGCATGCTATATTATCCAATTTAGGAATTCTGTACCGCCATCAGAAACAATATCAACGTGCGAAGGCCATGTTTACGAAGTCACTTGAACTTCAGTCTGGGTATGCTCCTGCATTCAACAATCTGGGTCTCGTGTTTGTTGCTGAGGGTCTTTTGGAAGAAGCCAAGTATTGTTTCAACAAAGCTCTCCAATCAGATCCATTGCTAGATGCAGCTAAATCTAATATGATTAAGGCGGTTGTCATGTCAAAGTTATGCAAAGGCCTCACCTCATGCGCTCTTAAAGAGTGA 2256 0.4473 MAEKFGVAAVAEESSNSRVPHHTTAKLVVLADLNVDPPEADDDDSSLVHPPSIATLANDESGQDKSLLSKDTDSIEGESKKLNKLGRCRSRLSKTESSLDCGADADGDQHVQGPPSSREEKVSSVKTGLVHVAKKMPKNAHAHFILGLMYQRLSQPQKAVLAYEKAEQILLRPEAEIDRPELLSLVQIHHAQCLLLESSSENSSDKELEPHELEEILSKLKESVQSDVRQTAVWNTLGFILLKTGRVQSAISVLSSLLSIAPENYDCLGNLGIAYLQMPWALTTTATFCGVTLPTFLSLRGWTVTIRDMDTGIHGLGNISQESILDSVVQKKAAKQHINMSKIGNLQEEVGWTGWVAEVDWPDEAISAEQKRKMWSLLEVAMPLEVCTETSLEQLILKDQNHPAALVNYAALLLGKYASVVAGPGASASEGAMADQTMSAKVAKECLLAAIKADSKSAHLWANLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVAIHRIKEAERSQDRSELLSCAGNEMASIIRDGDSSLVEIPIAWAGLAMVHKAQHEIVAAYESEQHGLREVEERALCSLKQAVAEDPNDAVQWHQLGVHSLCARQFKTSQKYFKAAVACDRDCSYAWSNLGVSLQLSEEPSQAEEVYKKALSLATTEQAHAILSNLGILYRHQKQYQRAKAMFTKSLELQSGYAPAFNNLGLVFVAEGLLEEAKYCFNKALQSDPLLDAAKSNMIKAVVMSKLCKGLTSCALKE 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01376 751 ProSiteProfiles TPR repeat profile. 458 491 IPR019734 GO:0005515
Vimu10g01376 751 MobiDBLite consensus disorder prediction 96 124 - -
Vimu10g01376 751 Gene3D Tetratricopeptide repeat domain 68 281 IPR011990 GO:0005515
Vimu10g01376 751 SMART tpr_5 621 654 IPR019734 GO:0005515
Vimu10g01376 751 SMART tpr_5 231 264 IPR019734 GO:0005515
Vimu10g01376 751 SMART tpr_5 538 571 IPR019734 GO:0005515
Vimu10g01376 751 SMART tpr_5 657 690 IPR019734 GO:0005515
Vimu10g01376 751 SMART tpr_5 691 724 IPR019734 GO:0005515
Vimu10g01376 751 SMART tpr_5 140 173 IPR019734 GO:0005515
Vimu10g01376 751 SMART tpr_5 458 491 IPR019734 GO:0005515
Vimu10g01376 751 SMART tpr_5 587 620 IPR019734 GO:0005515
Vimu10g01376 751 SUPERFAMILY TPR-like 133 278 IPR011990 GO:0005515
Vimu10g01376 751 Pfam Tetratricopeptide repeat 623 686 - -
Vimu10g01376 751 Gene3D Tetratricopeptide repeat domain 571 656 IPR011990 GO:0005515
Vimu10g01376 751 ProSiteProfiles TPR repeat profile. 691 724 IPR019734 GO:0005515
Vimu10g01376 751 Pfam Tetratricopeptide repeat 458 491 IPR019734 GO:0005515
Vimu10g01376 751 Pfam Tetratricopeptide repeat 233 264 IPR019734 GO:0005515
Vimu10g01376 751 Pfam Tetratricopeptide repeat 691 722 IPR019734 GO:0005515
Vimu10g01376 751 SUPERFAMILY TPR-like 567 731 IPR011990 GO:0005515
Vimu10g01376 751 ProSiteProfiles TPR repeat profile. 621 654 IPR019734 GO:0005515
Vimu10g01376 751 ProSiteProfiles TPR repeat profile. 657 690 IPR019734 GO:0005515
Vimu10g01376 751 SUPERFAMILY TPR-like 442 502 IPR011990 GO:0005515
Vimu10g01376 751 ProSiteProfiles TPR repeat profile. 231 264 IPR019734 GO:0005515
Vimu10g01376 751 Gene3D Tetratricopeptide repeat domain 389 525 IPR011990 GO:0005515
Vimu10g01376 751 MobiDBLite consensus disorder prediction 1 23 - -
Vimu10g01376 751 Gene3D Tetratricopeptide repeat domain 657 734 IPR011990 GO:0005515
Vimu10g01376 751 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 387 747 - -
Vimu10g01376 751 MobiDBLite consensus disorder prediction 35 73 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01376 537 723 Glycosyltransferase AT3G04240 25.532 1.03e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01376 - - gmx:100786537 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01376 10 14534762 14547371 Vimu10g01376 10 14534762 14547371 ECH