Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01343 ATGACTGTCACGGCGGCGCCAACGGTGAAGGACGGGTGTCTTACGGTGAGGAGAAAGACCGTTTTGTCCCATGTCCCCGGAAACGTTGTTGTTTCTCCGGTTGGAACAGAGTCCGCGTTCTTGGGTTCAACTTTAACCGTTTCAAGTTCTCGTCATGTTTTTGATCTTGGAATTCTTCAGGGATATAAGTTGCTATCTTTGTTCAGAGTCAAAATCTGGTGGATGATACCGCGTCTAGGGAGATCTGCCAGTGATGTTCCAATGGAAACTCAATTGCTGCTCTTGCTAGCAGATGAAGAATCTGCACTTGAGGATGAGATTTCTTCTGACTGTGAAGAGCCAGCTACGGGTAACAATTGCTACATTCTCTTCTTGCCTGTTTTGGATGGACAGTTTCGCGCAACTTTACAAGGAACTCAATCGAATCAGCTCCAGTTTTGCATTGAAAGTGGTTCGCAATCACCTGGTGCCACAGGGAACCTTAGAGATATAGCCATGGACAGCCTGGAAAAATATGGAGTGGGAATCATTGACCCAGAAAATCTCTATGACTTTTACAATGACTATCACAGTTACCTTGTCAGCTGTGGTGTGGATGGAGTCAAAGTAGACGTCCAAAATTTGATAGAAACGTTGGGTTCTGGGTACGGTGGTCGTGTTTCATTGACCAAACGGTATCAAGAAGCATTAGAGGAATCTTTCAAAGAAGAGCGCAGCAGCAAGAGCATATGA 732 0.4536 MTVTAAPTVKDGCLTVRRKTVLSHVPGNVVVSPVGTESAFLGSTLTVSSSRHVFDLGILQGYKLLSLFRVKIWWMIPRLGRSASDVPMETQLLLLLADEESALEDEISSDCEEPATGNNCYILFLPVLDGQFRATLQGTQSNQLQFCIESGSQSPGATGNLRDIAMDSLEKYGVGIIDPENLYDFYNDYHSYLVSCGVDGVKVDVQNLIETLGSGYGGRVSLTKRYQEALEESFKEERSSKSI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01343 243 PANTHER - 1 153 IPR008811 -
Vimu10g01343 243 SUPERFAMILY (Trans)glycosidases 171 235 IPR017853 -
Vimu10g01343 243 Pfam Raffinose synthase or seed imbibition protein Sip1 9 153 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01343 Vimu-Chr10 14105848 14109962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01343 153 233 Glycoside Hydrolase AT3G57520 65.432 1.29e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01343 - - vum:124838705 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01343 10 14105848 14109962 Vimu10g01343 10 14105848 14109962 ECH