Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01342 ATGTTCTTCATATCTTGCAGTAAAATCATGATCACAATCCTATTTATCTTGATTTGTGTTGGATTCAGCGATGGTGCCAATGTGACACCGTCTGTGGGGAGAAAAGGGCAGTGGCAACTGCTCCTTAACAGCACTGGCGTGGTTGGCATGCATCTGGCTTTAACCTACAAAAACACAGTCGTAATGTTCGATCAAACTGGAGCTGGCCCTTCTGGTTACAAACTTCGCAGACGCTTCCATGGAAGCACGTGCAGCAGAAGCAGGCATGATATGACGGACTCCACATGCTATGCTCATTCTGTAGAGTATGACATTAGTACCAATAAAGTGAGGCCTCTGTGGCTTGACACTGATCCTTGGTGTTCCTCTGGTTCATTCCTGAGCAATGGTACTCTTTTACAAGTAGGCGGAAATGAAAGAGGTGCTAAACGTGTCAGATTCTTTAGGCCCTGTGGGAATGACCAATGTAACTGGATACAATCAAAGAAAACGCTATCTGATATGAGGTGGTATGCTTCTAGTCAGCTACTACCAGAACATGATAGGCTGGTGGTTGTTGGTGGAAGAAGAACTTTCACATATGAATTTGTACCAAAAATTAGTCCTGGAGAAAAATCCTTTGACCTTCCATTCTTGCACCAAACCGATGACAGGAATGAAGGAGGGAACAACCTATACCCCTTTCTCCACCTTTCATCAGACGGAAACTTAAACAGAGTCATCAAGACCTTCCCTCGGATTCCAGGAGAAGGGTCGAGAAACTATCCAAGCTCAGGTTCATCTGTGATACTACCATTGGACCACAGAGACAACTTCCAAAAGGTGGAAGTTATGGTGTGTGGTGGTTCATCCACTGGAGCCTTTACAGCTGCCGCTAGGCGAAGATTCTTGGAAGGGTTAAGATCATGTGGAAGAATGGTGATCACAGGAGAGAAGAACAAGTGGAATATGGAGCACATGCCGAAGCCACGTCTCTTAAATGACATGGTGATTCTCCCCATAGGTGACATCCTAATCATAAATGGTGCTGAACGAGGGTCTGCGGGATATGACAATGCTAGAAACGCTTCTCTTGAACCTTTTCTCTACAGCCCCAACAAAAGACTTGGAGCAAGGTTCAGAGTCCTTATGTCCACCAAGATAGCAAGAATGTATCACTCATCGGCAACTCTTCTTCCTGATGGGAGGGTCTTGGTTGCGGGTAGTAACCCTCATGGGAGGTACATTTTTCACAATGTGGCATACCCAACTGAACTAAGACTTCAAGCATTTGTTCCACACTATATGGAAAGGAGGTACCATAGCTCGAGGCCTAATAACTTGACCATAGAATATGGTGGTGCCAGCCATGCAATTGAGTATGGGAAAGAGTTTAGAGTTAGGTTCTTCCTAATGAGGAGGCCTAACAACGAGATGGTGTTCAGTGCCTATGCACCACCATTTACCACTCATTCTTTTGCCATGAATCAGAGGATGCTGAAGCTGAGGTGCAGGAGCTTGAAGAGAAGTGGTGATGGGTGGGTGGTTGCAGTCTTGGAAGCCCCACCATCATCCCTTGTTGCACCTTCTGGTTACTACATGCTCACGGTTGTCAATGGTGGAATTCCAAGCATGTCTCAGTGGGTTCACTTTGGACACGCCTAA 1644 0.4586 MFFISCSKIMITILFILICVGFSDGANVTPSVGRKGQWQLLLNSTGVVGMHLALTYKNTVVMFDQTGAGPSGYKLRRRFHGSTCSRSRHDMTDSTCYAHSVEYDISTNKVRPLWLDTDPWCSSGSFLSNGTLLQVGGNERGAKRVRFFRPCGNDQCNWIQSKKTLSDMRWYASSQLLPEHDRLVVVGGRRTFTYEFVPKISPGEKSFDLPFLHQTDDRNEGGNNLYPFLHLSSDGNLNRVIKTFPRIPGEGSRNYPSSGSSVILPLDHRDNFQKVEVMVCGGSSTGAFTAAARRRFLEGLRSCGRMVITGEKNKWNMEHMPKPRLLNDMVILPIGDILIINGAERGSAGYDNARNASLEPFLYSPNKRLGARFRVLMSTKIARMYHSSATLLPDGRVLVAGSNPHGRYIFHNVAYPTELRLQAFVPHYMERRYHSSRPNNLTIEYGGASHAIEYGKEFRVRFFLMRRPNNEMVFSAYAPPFTTHSFAMNQRMLKLRCRSLKRSGDGWVVAVLEAPPSSLVAPSGYYMLTVVNGGIPSMSQWVHFGHA 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01342 547 Gene3D - 32 435 IPR037293 -
Vimu10g01342 547 SUPERFAMILY Galactose oxidase, central domain 100 429 IPR011043 -
Vimu10g01342 547 PANTHER SECRETED PROTEIN-RELATED 26 544 - -
Vimu10g01342 547 SUPERFAMILY E set domains 435 544 IPR014756 -
Vimu10g01342 547 Pfam Galactose oxidase-like, Early set domain 449 543 IPR015202 -
Vimu10g01342 547 Pfam Glyoxal oxidase N-terminus 50 282 IPR009880 -
Vimu10g01342 547 Gene3D Immunoglobulins 440 546 IPR013783 -
Vimu10g01342 547 CDD E_set_GO_C 433 543 IPR015202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01342 Vimu-Chr10 14094670 14096358 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01342 - - gmx:100814200 913.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01342 10 14094670 14096358 Vimu10g01342 10 14094670 14096358 ECH