Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01341 ATGGGCGGATCAGTTTCAAAACGAAGGAGTTCTAGGCGACGTTCGTCCTCAAATTTTTTTCCTCGGTATCAATCGCCTTATTTGCCACAAAACCAAGATCAAGGGTCTGTGAGACATTACGGGTATTCATCTCAAAGCAATGGTGGTGGTCCTGTTCCAGAACAAGGAAAGAGATCAGATGGGAAGTATTCAAGGATAGGTGATAATTATAAGAGCTTAGACCAGAGTATGCTGGTTTACACTGAATGCATGCAATGCAACTGTTATTGTATTTTGAATTTAAGCTCTCAGGTAACTGAAGCTTTATCAAATGCTGGCCTAGAATCTTCCAATCTCATTGTGGGTATTGATTTTACGAAGAGTAATGAGTGGACAGGTGCAAGGTCATTTCAAAGGAGATGCCTGCATTACATTGGTCATGAACAAAATCCGTATGAGCAAGCTATATCTATCATTGGGAAAACTCTATCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGTTTTGGAGATGCATCAACTCATGATCAAGAAGTTTTTAGTTTCTATCCTGATGAGAGATTTTGCCAAGGATTTGAAGAAGTATTGGGACGATATAGGGAATTGGTCCCTCAGTTAAGACTTGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTTGAGCAAAGTGGAGGCCAATACCATGTCTTAGTGATTATAGCTGATGGCCAGGTGACGAGAAGTGTTGACACTGAGCATGGTCAGTTGAGTGCACAAGAAAAGAAAACTGTGGAAGCTATTGTGAAAGCTAGTGAATATCCCTTGTCGATCATATTAGTTGGGGTTGGAGACGGGCCGTGGGATATGATGAAACAATTTGACGATAACATCCCGGCCCGAGCGTTTGATAATTTCCAGGCATATTATCTGTTTATGGAGCCATCTAATAAGCTGTACAACTTTTCAAACAGTACTCGAAGAGGGAAAGATATTGACAGGGTTCCTCTGCCACCACCTCTATACGGTGCAGCATCTTTCAATTCCCCATCTTTCAATTCCCCAAAAACTTCCCGTCAGAACAGTTTTCGTCCAAGTGCACCATCTAGCGGACATGATGTTAGGCCGAACCCTCCCGCAACTACTGCTTCTGATAATCAGGTTTGTCCCATTTGCCTCACCAATCCTAAAGATATGGCCTTTGGATGCGGGCATCAGACATGCTGTGAGTGCGGACAAGATCTTGAGTTATGCCCCATTTGCAGGAGCACCATCAATACTAGAATAAAACTATATTAG 1293 0.4246 MGGSVSKRRSSRRRSSSNFFPRYQSPYLPQNQDQGSVRHYGYSSQSNGGGPVPEQGKRSDGKYSRIGDNYKSLDQSMLVYTECMQCNCYCILNLSSQVTEALSNAGLESSNLIVGIDFTKSNEWTGARSFQRRCLHYIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCQGFEEVLGRYRELVPQLRLAGPTSFAPVIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTEHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKQFDDNIPARAFDNFQAYYLFMEPSNKLYNFSNSTRRGKDIDRVPLPPPLYGAASFNSPSFNSPKTSRQNSFRPSAPSSGHDVRPNPPATTASDNQVCPICLTNPKDMAFGCGHQTCCECGQDLELCPICRSTINTRIKLY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01341 430 ProSiteProfiles Zinc finger RING-type profile. 387 420 IPR001841 -
Vimu10g01341 430 MobiDBLite consensus disorder prediction 345 381 - -
Vimu10g01341 430 PANTHER COPINE FAMILY PROTEIN 1 31 407 - -
Vimu10g01341 430 MobiDBLite consensus disorder prediction 1 65 - -
Vimu10g01341 430 MobiDBLite consensus disorder prediction 345 366 - -
Vimu10g01341 430 SUPERFAMILY RING/U-box 381 426 - -
Vimu10g01341 430 SUPERFAMILY vWA-like 110 293 IPR036465 -
Vimu10g01341 430 MobiDBLite consensus disorder prediction 16 52 - -
Vimu10g01341 430 Pfam Copine 134 305 IPR010734 -
Vimu10g01341 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 430 IPR013083 -
Vimu10g01341 430 Pfam Zinc finger, C3HC4 type (RING finger) 384 424 - -
Vimu10g01341 430 SMART VWA_4 109 314 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01341 Vimu-Chr10 14079823 14083055 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01341 K16280 - gmx:100790800 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01341 10 14079823 14083055 Vimu10g01341 10 14079823 14083055 ECH