Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01307 ATGTTGAGGCTTCACGTGTGTGTGTTGGAGGCCAAGGACCTTCCAGTGAGTGCTACGTACGTGAAGCTTAGACTCTCCAAGTTGAAGGCCAAGACAAGGATTTTGACAAACACGTGCAACCCCGTTTGGAATCAGGAGTTTTGTTTCAGGGTGCATGATGCTGAGGACGTGCTCGTTCTGTCTGTTGTTAGTCATGTGAATGAGTGCAGAGTGACAAAAGGTTATGTCGGTTTCGTGGGTGAGGTTCGGATACCTGTAGGCTCAATTTCTTTTGAGCATACCTTGCTGCCCACCTGGTTCTCTCTTCAAAGCCCCAAGAGTGGGAAATTTTTCAATAAATATTGTGGAAAAATTCTCCTTACTGTTTATCTTCGTGGTAAAGGCCGTGCTTCTTTTACCAAGCATAAGCATTCTCCAAATCCGACACTTGCAGTTGAGAATTCGAAGGAATTGGAAGGTCTTCACAGTTCATGTCGGGCACCTTGTGATAAAATGGGTGTAGGCAAACTGTTGAGGGTTATTGCTAATGGTCTGCATAAGATTTTGAAAAAGAAAGAAGGAAACTCAAAGCTCGGGGATTCTTCAGAACAATCCACGTTATTATCTGATCCTGAAGTTAGTGCTCATGAAAATTCACCTACTTGTAGCTTTGAAGAAGCCCTTGCACAAATGGAATCAAGAGATAACAAACCAGAAATGCCTGAAAATTTGTCGGGCGGTGTTCTAGTAGATCAGATTTATTTATTCTCTCCATATGACCTTAATTTGTTTCTTTTTGCGCCCAAGTCACAGTTTCGTAAAGATTTGGCTGAGCTGCAGGGAATAACAAATGTGCAAGAGGGACCTTGGACATGGAAAAATGGAGATATGTCAAGTTTAACACGAGTAGTTACTTGTACAAAAGCTGCAACAAAATTGGTTAAGGAAGTTGGTGCCACTGAGGAGCAAACGTACGTTAGAGTGTGTAGAAAGGAATTTGCTATACTTTGTAGCATAAGTACACCTGAAGCTCCATATGGGAATACATTTAGGATTGAATTGCTTTACAAGATAATGCCTGGTGAAGAGGTACCTTCAGGAGAGGAATCCTCCCATCTTAATGTGTCATGGGGCATTGTCTTCCTCCAAAGCACAATGATGAAAGGCATGATAGAAAGTGGGGCAAGGCAGGGATTGAAGGAGAGTTTTAACCAGTTCTCCCAAAAACTAGCGCAGAATTTTAAGGTTCAAGATAAGGCAAATCTTTCAGACAAGGAACATTTTTTGGCAACTTTGCAAACTGAAGACCAGTGGCATTGGTGGCAGGAAGTTTCATACTTTTGTAATTTCACTGTGGTTTCCACCTTTTTCATGTGTTTGTATGTGATTGTGCATATTTTGTATTGTGGTCCAAGTCTACCTCAGGGCTTGGAATTTGGGGGGCTTGAATTGCCAGATAGTTTTGGGGAACTCATTATAGGTGGAATTATATCCATCCAGTTGCAGCGTGTTTACAATATGCTGTCTCACTTTGTTCAAGCCAGATTTCAAATGGGAACTGACCATGGCCTCAAAGCTCATGGTGTTGGATGGGTTCTTACAGTGGCTTTAATTGAGGGGATTGACTTGGCTTCCTTGGAATCAGAAGAGGTATCAGATCCCTATGTAGTTTTCACCTGTAATGCACAAACAAGATCAAGCTCTGTCAAGCTTCAAACATCGAATCCTCAATGGAATGAAATATTAGAGTTTGAAGCTATGGAAGAACCACCATCAGTTTTGGATGTGGAAGTGTTTCATTTTGATGGTCCATTTGACCAGGATGTTTCACTTGGACATGCTGAGATCAATTTCCTTAAGCACACATCAACTGAGTTGGCAGACATGTGGCTCTTGCTCGAAGGAAAACTTGCTCAATCTTCTCAGTCAAAGTTACACCTGAGAATTTTCTTGGACAATAATAAAGGAGTTCAGACAATAAAGGAATATTTGGGGAAGATGGAAAAGGAAGTAGGCAAAAAGTTGAATCTTAGATCACCACAAAGGAGTTCTACATTCCAGAAATTGTTTGCATTACCTCCGGAAGAATTTCTCATAAAAGATTTAACTTGTTACCTCAAGAGAAAAATGCCTTTACAGGGTCGGCTGTTTCTTTCAGCAAGGATTCTTGGTTTTTATGCCAATTTCTTTGGACACAAAACCAAATTTTTCTTCCTTTGGGAAGACATTGAAGACATAAAAGTGCTTCCTCCATCGTTGGCAACATTAGGAAGTCCTACATTGGTCATAATCCTGAGAAGTGGTCGAGGAATTGATGCAAGGCACGGTGCAAAGACTCAAGATGAAGAAGGGAGACTTAGGTTTCATTTTCAATCATTTTCTTCATTTGGTGCTGCCTGCAGAACGATAAAGGCATTGTGGAGAACAAGAATTCTGAACCCCTATCAGAAAGATCAAATTACAGAAGAACATGAAGATCAAGAAGGCTTTATAATTCCAGAAGACTCTGCATCTATCTTGGAGAATAAAGTAAACATGTCCAGAATCTTCTCTGCAGAACTACCATTCAGGATGATATCTGTGATGGGAATTTTTGCTGGAGGAACCCTGGAGCATAAAATTATGCAGAGAAAAGGATGTATGAACTATGAAACTAGCGCGTGGGAGCTCGTAAAACCTGAGGTGTTCGAGAGGCGTGTTTCTTACCAATTCAATCGACAAGTATCAACTTTTGGAGGTGAAGTCACAAGCACACAGCAAAAATCTCCAAATGCAGACACTGGAGGGTTGACTGTCGTTGAAGTTATGGCTCTTCATGGTGTCCCTTTTGCTGATCACTTTCATATTCATTTTAGGTTCGAAATTGAGCCATCATCTCTTGGTGAACGTGCTTGCAAATTTGATGCTTACATTAGTGTTATGTGGCTTAAGAGCTCCAAGTTTCAGCAGAGGATCAACAGGAACATAATATCCAAGTTTAAGCATCGACTGAAGGAAATATTTGAACTGGTTCAGGAAGAGATTTTGATCATGTCTCAGAACTCAAATGAATAA 3033 0.4085 MLRLHVCVLEAKDLPVSATYVKLRLSKLKAKTRILTNTCNPVWNQEFCFRVHDAEDVLVLSVVSHVNECRVTKGYVGFVGEVRIPVGSISFEHTLLPTWFSLQSPKSGKFFNKYCGKILLTVYLRGKGRASFTKHKHSPNPTLAVENSKELEGLHSSCRAPCDKMGVGKLLRVIANGLHKILKKKEGNSKLGDSSEQSTLLSDPEVSAHENSPTCSFEEALAQMESRDNKPEMPENLSGGVLVDQIYLFSPYDLNLFLFAPKSQFRKDLAELQGITNVQEGPWTWKNGDMSSLTRVVTCTKAATKLVKEVGATEEQTYVRVCRKEFAILCSISTPEAPYGNTFRIELLYKIMPGEEVPSGEESSHLNVSWGIVFLQSTMMKGMIESGARQGLKESFNQFSQKLAQNFKVQDKANLSDKEHFLATLQTEDQWHWWQEVSYFCNFTVVSTFFMCLYVIVHILYCGPSLPQGLEFGGLELPDSFGELIIGGIISIQLQRVYNMLSHFVQARFQMGTDHGLKAHGVGWVLTVALIEGIDLASLESEEVSDPYVVFTCNAQTRSSSVKLQTSNPQWNEILEFEAMEEPPSVLDVEVFHFDGPFDQDVSLGHAEINFLKHTSTELADMWLLLEGKLAQSSQSKLHLRIFLDNNKGVQTIKEYLGKMEKEVGKKLNLRSPQRSSTFQKLFALPPEEFLIKDLTCYLKRKMPLQGRLFLSARILGFYANFFGHKTKFFFLWEDIEDIKVLPPSLATLGSPTLVIILRSGRGIDARHGAKTQDEEGRLRFHFQSFSSFGAACRTIKALWRTRILNPYQKDQITEEHEDQEGFIIPEDSASILENKVNMSRIFSAELPFRMISVMGIFAGGTLEHKIMQRKGCMNYETSAWELVKPEVFERRVSYQFNRQVSTFGGEVTSTQQKSPNADTGGLTVVEVMALHGVPFADHFHIHFRFEIEPSSLGERACKFDAYISVMWLKSSKFQQRINRNIISKFKHRLKEIFELVQEEILIMSQNSNE 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01307 1010 SMART gram2001c 677 743 IPR004182 -
Vimu10g01307 1010 Pfam C2 domain 525 624 IPR000008 -
Vimu10g01307 1010 Pfam C2 domain 3 102 IPR000008 -
Vimu10g01307 1010 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 524 649 IPR035892 -
Vimu10g01307 1010 ProSiteProfiles VASt domain profile. 838 1001 IPR031968 -
Vimu10g01307 1010 Pfam VAD1 Analog of StAR-related lipid transfer domain 242 391 IPR031968 -
Vimu10g01307 1010 Pfam VAD1 Analog of StAR-related lipid transfer domain 843 984 IPR031968 -
Vimu10g01307 1010 Pfam GRAM domain 679 758 IPR004182 -
Vimu10g01307 1010 ProSiteProfiles C2 domain profile. 505 624 IPR000008 -
Vimu10g01307 1010 Gene3D - 675 802 IPR011993 -
Vimu10g01307 1010 CDD C2 4 102 - -
Vimu10g01307 1010 ProSiteProfiles C2 domain profile. 1 100 IPR000008 -
Vimu10g01307 1010 MobiDBLite consensus disorder prediction 192 213 - -
Vimu10g01307 1010 SMART C2_3c 525 624 IPR000008 -
Vimu10g01307 1010 SMART C2_3c 3 98 IPR000008 -
Vimu10g01307 1010 CDD C2 526 626 - -
Vimu10g01307 1010 PANTHER BNAA05G37250D PROTEIN 3 1002 IPR044511 -
Vimu10g01307 1010 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 134 IPR035892 -
Vimu10g01307 1010 Gene3D C2 domain 510 644 IPR035892 -
Vimu10g01307 1010 ProSiteProfiles VASt domain profile. 238 411 IPR031968 -
Vimu10g01307 1010 MobiDBLite consensus disorder prediction 187 213 - -
Vimu10g01307 1010 Gene3D C2 domain 2 150 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01307 Vimu-Chr10 13654854 13659180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01307 1 138 Lipid Metabolism Gene Families AT1G22610 30.405 3.38e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01307 - - gmx:100811103 1623.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01307 10 13654854 13659180 Vimu10g01307 10 13654854 13659180 ECH