Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01269 AATGAGATTGCGCGCGACGTTGTCGTTTTAGCACCATCCATGGCTTACTACGATTCTGCGCCTTCTGTCCCTCTCCTATGGAACTTCTCTCAAGTACTCGGCCAACAACTTCCCAACGAGCCTCTCCAGAACGACGACATCATAACAGCCATTGCTTTCGATAAGCTCGGCGATCATCTCGCCGTTGGCGATCGAGGTGGACGCGTTGTAATATTCGGAAGAGACGATCGGAAAAAGAATGTTTCGATTAATCGAAGGGATCTGGAGCAGCGGGATTTCGCCTCGCAGCATCCCGAATTTCGTTACAAGACAGAATTTCAGAGCCACGAACCCGAGGCACCTTTCATTTTGTGTTCTGCGGTGTTTCTGGGGCAGGTTAAGGAGCATAGAGTGAAACAAGTTATAGAAATGGCCCCTCCTTTGTGCTCAGAAAATATGCTTTTGGCGGAAAGTAGTTTCGTACCAGGGCTGGAAACCAAGTCTGCTGCTAATGGCTATCGTTTGGAATGGATAGAGAAGATGCCTCGGAATCATTTGCCGCCTCAGGACGTTGATAGCGAGATTGGTGGAATGGAAGACCCTTTTCGCGCAAAGCGCCAAAAGGTTTATGCTTATGCTCACAGTTTCAACATTAACTCCATCTCAAATAATAGTGATTATGAGACCTTTGTCTCGGCAGACGATCTTAGAATCAATTTGTGGAATCTTGAGGTCAGTGATCAGTGTTTCAACATTATTGACATGAAGCCATCAAACATGGAGGACCTTACCGAGGTCATAACATCAGCTGAATTTCATCCTTTACATTGTAACCTCCTTGCATATAGCAGCTCACAAGGTTTAATTCGTCTATCTGATTTGCGACATTCAGCAATATGTGACCATGCTTCCAGAATATTTCAACATGGAGAGAGTTATGGATCGAAGTCATTTTTTACAGAAATCACTTCTTCCATCTCAGACATAAAGTTTTTAAATGATGGCCAGCATCTTCTAAGTCGCAATTACATGAATATGAAGCTTTGGGACATGCGTAAGGAGTCATCTCCAGTCGCAATATTCAAAATTCACGAGCATCTGCGTCCTAAGTTGCCAGAGCTATATAATAACGACTGCATATTTGATAAATTTGAGTGCTGCTTTAGTGGTGATGGACTCCATTTTGCAACTGGTTCTTATAGCAATATCTTGCGGATATTCTCCCCAGGTTCTGGAAGAGAGGAAGGGATTAAACTAGAAATTAGAGGAAATTCTAATAGGAAGGCTATTCACCAATCTAAGTCAAGGGCTAGAAGGTCTTCTCTAAGCAACATAATACCTCGTGGAATTTACCATCACGCCCACGTTGATTCAGAGCCTAGCAGCATCGACTCTCTTTGTAATCTAAGGTCCAAGCTGCTACAAGTAGCTTGGCATCCTACATGCAATCTAGTTGCATGTGCTGTAGAAAGTAGCCTAGTCTTGTACTATGCTTAA 1476 0.4356 NEIARDVVVLAPSMAYYDSAPSVPLLWNFSQVLGQQLPNEPLQNDDIITAIAFDKLGDHLAVGDRGGRVVIFGRDDRKKNVSINRRDLEQRDFASQHPEFRYKTEFQSHEPEAPFILCSAVFLGQVKEHRVKQVIEMAPPLCSENMLLAESSFVPGLETKSAANGYRLEWIEKMPRNHLPPQDVDSEIGGMEDPFRAKRQKVYAYAHSFNINSISNNSDYETFVSADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITSAEFHPLHCNLLAYSSSQGLIRLSDLRHSAICDHASRIFQHGESYGSKSFFTEITSSISDIKFLNDGQHLLSRNYMNMKLWDMRKESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNILRIFSPGSGREEGIKLEIRGNSNRKAIHQSKSRARRSSLSNIIPRGIYHHAHVDSEPSSIDSLCNLRSKLLQVAWHPTCNLVACAVESSLVLYYA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01269 491 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 235 262 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 460 489 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 374 400 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 263 291 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 292 319 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 207 234 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 320 347 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 348 373 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 99 127 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 52 72 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 PIRSF PPA2_B55 158 491 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 PIRSF PPA2_B55 18 119 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 SUPERFAMILY WD40 repeat-like 41 487 IPR036322 GO:0005515
Vimu10g01269 491 SMART WD40_4 305 343 IPR001680 GO:0005515
Vimu10g01269 491 SMART WD40_4 239 286 IPR001680 GO:0005515
Vimu10g01269 491 SMART WD40_4 198 235 IPR001680 GO:0005515
Vimu10g01269 491 SMART WD40_4 452 490 IPR001680 GO:0005515
Vimu10g01269 491 SMART WD40_4 347 401 IPR001680 GO:0005515
Vimu10g01269 491 SMART WD40_4 35 73 IPR001680 GO:0005515
Vimu10g01269 491 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 24 491 IPR000009 GO:0000159|GO:0019888
Vimu10g01269 491 Gene3D - 170 490 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01269 Vimu-Chr10 12850166 12862418 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01269 K04354 - gmx:100795137 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01269 10 12850166 12862418 Vimu10g01269 10 12850166 12862418 ECH