LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g01261	ATGAATGTGCGCGGCGAACTCAGTTCTCCGGATCCGTTGGATTCGTTTCCTCCGTTGCGGGTTCGGGAATCGGACGGTGCCTCGGATGATTCCGAGTTCGAGCGGTATTGCAGCGCCAACTCGGTTATGGGAACGCCCAGCACCAGCATGAGCATGTGCAGCGCTGTCACGCTCTTTAACGATTTCTCCGATTGCGATTTCGCCTCTTCGGCGGAGGGTTTCGAGAGTTTCAGTTTGGGAAAGGGAACGACGGAGGCTAATTGCGCCGGCAACCGGCGACGGAGTCTGCGGTACGGTTCCAGTGGATTGGAGCTGTACGGTGATTGCAGTGAGGAGCTCGCTTTGACTGCGCTCGATTCCTCGGAGTTGATTGGGTTTAACCGGATCGAAGAGCCGAATGGGAACGGTGAAGTGAGTGCTGGAGAAGGTGGTGTAAATGGTTTTGAATTTCAAATTGATAAAAGAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAATTGGAAGAGTTATCGGAGGGTGATGATTCTATGTATAATTATGACAGTGATGGTAATGGTGACGGTGGAAAGGAAATTTATTTGACGGAAAACATGGGTTACTGTGAAGAGAGGGAAGTGAGAAACGAGAACTCTTTGTTTATGAACACTTCCGTGGCCTATGGTTCGCGAGACTTGGATGATTTTTTGCTGCAAAACGGTCCCGTTTCTGTCATGTCTGATCTATTTCACAGTCAGCGAAAAAAGAATGATACATTGAATCCGGGTTCTGGTCAAAAAGAGCAAGGGAAAAATGTAAAGGACATGGTTATAGTCAATGAAGTTGAAGAAACTAAAGATATAGATTATTCTAATGCCGTAGAAAAGGTTAAGGACAGGGAAGTTCTTATGGCTTCTTACTTAGAGGAAAGTTCTGCACCAATCAATTCTCCGAGCAGTGTCAAGATGCCGATCCGAGTTTCTGGTGATTTGGCTAGTTGTCCTGAAGTTTCTTCTGTTACCGAGGTGGATGAAGTTCATTTGGATCTTCCGGAGAAAGAAGCTCCTCGGAATATGGGTTTGGGTGTTAATGGTTGTGGTAGCATGGAGAAAGGAAATGTCAACAGTGAAGAAGCTATTGCAGGTTTTGATGCTCCTGGTGTAAAGTCGGAGCTGGATGATTCTATGTTCAGGTTTGATCACATCAGTGATGATAGCCAATTTCATAAGAGTTCTTCCAATCCATCCAGCCATCTTAAGAACGTTATTGCAAAATCATTTGAGTGTGTTGAACCAATTGCGCAGCTGTCAGACAGTGGAATGAGGAAAACATTAGAGAGTTCACCCACTTCAACAAATCTCTTAGAGAAAAGTCCTGTGGTGTCTAAGACAGAAGACTTTGAGCTAAATGAATTTTATGACGAGGTTGTTCAGGAAATGGAAGAAATTTTACTTGAATCTGTCGATTCTCCAGGGGCTAGGCTTTCCATGGGTAACAGATTGGTTGAGCCTCAATTTTCTATGCCTTCAAGAGATGGTGGGTTGACTGCTTCTACTTCTAGCACAGATGATACTTACCTGCTAGTTCAACGCCCAAGAAGAATAGATAGGATCGAAGTGGTAGGTGCGAGGCAGAAGAAAGGCGATGTTTCTTTCAGTGAAAGATTGGTTGGAGTGAAGGAATACACTGTGTATATAATTAAAGTGTGGAGTGGCAAGGACCAGTGGGAGGTTGAAAGGCGATATCGTGATTTCTTCACTCTTTATCGTTGCATGAAAGCATTATTCAATGAGCAAGGCGGGAAATTACCTTTGCCATGGTCTTCTGTGGAAAAGGAAACCCAGATATTTAGAAGTGCATCTCCTGATATTATTGTGAAAAGAAGTGTTCTCATTCAAGAGTGTTTACAGTCTTTTATCCATTCCAGGTTCTCTCCTCCTAGAGCATTGACATGGTTTTTGTCCCATCAAGATTCGTATCCTATTTCACCTGTGTCAAATGTACAGGATTCTCAGTCTTCTTTTACAGGATGGCAAAATTTTCGAAACATTTCCAATTTAGGAAAGACAATTTCACTCATTGTTGAAATTCCACCAAACAAATCTATCAAACAGTTGTTAGAAGCACAGCATCACACCTGTGCTGGATGCCATAAACATTTTGATAATGGAAGAACTTTGATTTGGGATTTTGTACAAACATTTGGATGGGGGAAGCCTCGACTCTGTGAATACACTGGCCAGTTGTTTTGTTCTTCTTGCCACACAAATGAGACTGCAGTCTTGCCAGCCAGAGTTTTACATCACTGGGATTTTACTCATTATCATGTTTCTCAGCTGGCAAAATCCTATCTAGATTCTATATATGAACAGCCCATGCTCTGTGTCACTGCAGTTAATCCCTTCCTCTTGTCAAAGGTCCCAGCCCTGCTTCATATTATGAGTATCAGAAAAAAGATAGGTATAATGATTCCATACGTTCGCTGCCCATTTCGGAGGGCCATTAACAGAGGACTTGGAAACAGGAGATATCTTCTCGAAAGCAATGACTTTTTTGCTCTTAGAGATTTGATTGATCTTTCCAGAGGAGTCTTTGCTGCACTTCCTGTGATGGTGGAAACTGTGTCAAGGAAAATCCTGGAACACATTACTGACCAATGCCTTGTATGTTGTGATGTGGGAGACCCCTGCAATGCCCGACAAGATTGCAGTGACCCATCTTCTCTCATTTTCCCATTTCAGGAAGAGGAGATTGAAAGGTGCAAAGCTTGCCAGTTGGTTTTCCATAAGCGTTGCTTTAGAAAACTTGGAAATTGTCCCTGTGGTGCTCAACTCAGATTGAAGGAGACAAGGAGCTTTATTAACAGAGTAAGCCAAAGGGGTGGTGGTGAAACAAGAGGATCTTTTGACTTATTAGGCAGAGGACTGACTTCTGGGTTGTCACAAAAGTTCCTATCTGGATTTTTTACAACAGAAAAACCAGACAAGACTAAGGACCATAAAGACGAAAATATTATTTTAATGGGTTCCTTACCAACCACTTCTTTATGA	3024	0.4296	MNVRGELSSPDPLDSFPPLRVRESDGASDDSEFERYCSANSVMGTPSTSMSMCSAVTLFNDFSDCDFASSAEGFESFSLGKGTTEANCAGNRRRSLRYGSSGLELYGDCSEELALTALDSSELIGFNRIEEPNGNGEVSAGEGGVNGFEFQIDKREEEEEEEEEELEELSEGDDSMYNYDSDGNGDGGKEIYLTENMGYCEEREVRNENSLFMNTSVAYGSRDLDDFLLQNGPVSVMSDLFHSQRKKNDTLNPGSGQKEQGKNVKDMVIVNEVEETKDIDYSNAVEKVKDREVLMASYLEESSAPINSPSSVKMPIRVSGDLASCPEVSSVTEVDEVHLDLPEKEAPRNMGLGVNGCGSMEKGNVNSEEAIAGFDAPGVKSELDDSMFRFDHISDDSQFHKSSSNPSSHLKNVIAKSFECVEPIAQLSDSGMRKTLESSPTSTNLLEKSPVVSKTEDFELNEFYDEVVQEMEEILLESVDSPGARLSMGNRLVEPQFSMPSRDGGLTASTSSTDDTYLLVQRPRRIDRIEVVGARQKKGDVSFSERLVGVKEYTVYIIKVWSGKDQWEVERRYRDFFTLYRCMKALFNEQGGKLPLPWSSVEKETQIFRSASPDIIVKRSVLIQECLQSFIHSRFSPPRALTWFLSHQDSYPISPVSNVQDSQSSFTGWQNFRNISNLGKTISLIVEIPPNKSIKQLLEAQHHTCAGCHKHFDNGRTLIWDFVQTFGWGKPRLCEYTGQLFCSSCHTNETAVLPARVLHHWDFTHYHVSQLAKSYLDSIYEQPMLCVTAVNPFLLSKVPALLHIMSIRKKIGIMIPYVRCPFRRAINRGLGNRRYLLESNDFFALRDLIDLSRGVFAALPVMVETVSRKILEHITDQCLVCCDVGDPCNARQDCSDPSSLIFPFQEEEIERCKACQLVFHKRCFRKLGNCPCGAQLRLKETRSFINRVSQRGGGETRGSFDLLGRGLTSGLSQKFLSGFFTTEKPDKTKDHKDENIILMGSLPTTSL	1007

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g01261	1007	MobiDBLite	consensus disorder prediction	1	31	-	-
	Vimu10g01261	1007	PANTHER	PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN	29	940	-	-
	Vimu10g01261	1007	MobiDBLite	consensus disorder prediction	154	175	-	-
	Vimu10g01261	1007	Pfam	Putative zinc-RING and/or ribbon	732	935	IPR025258	-
	Vimu10g01261	1007	SUPERFAMILY	PX domain	546	649	IPR036871	GO:0035091
	Vimu10g01261	1007	ProSiteProfiles	PX domain profile.	534	652	IPR001683	GO:0035091
	Vimu10g01261	1007	MobiDBLite	consensus disorder prediction	154	187	-	-
	Vimu10g01261	1007	CDD	PX_domain	541	629	-	-
	Vimu10g01261	1007	Gene3D	-	541	650	IPR036871	GO:0035091
	Vimu10g01261	1007	Coils	Coil	145	172	-	-
	Vimu10g01261	1007	SMART	DUF4206_2	732	939	IPR025258	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g01261	-		-	vra:106762619	1904.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g01261	10	12733390	12739073	Vimu10g01261	10	12733390	12739073	ECH