Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01256 ATGGGAAAGTTGAACTCAATAGTCACTTCTTCAGATTTGGTTCACCGTGGTATTCTACTTTTCCTAATTCTTTTATCACAGTATTCCATTGAACCTGCATCTTGCGCCTCCAGAGTGAAGTTCCTTCCAGGATTCGAGGGACCCCTTCCTTTTCTTCTTGAAACTGGGTATGTGGGAGTGGGAGAATCAGAGGATGTCCAAACATTTTACTACTTCATTGAGTCAGATAACAATCCCAAGGAAGATCCTCTCATCCTTTGGCTATCCGGTGGCCCTGGTTGTTCATCCCTAACTGGCCTTTTTCTTGAAATAGGGCCACTTGCACTAAAACAGGAGGAGTACAATGGAGATGCACCCAACTTGATCCTCAGGAATCAATCATGGAACAAGGTTAGTAACATTATATATGTAGACTTGCCTGTTTTCTCCGGCTTTACTTATGCCAGAACTGAACTTGCTGCTCAAAGTAGTGATAAGTTGTTAGTTCGTCAAACCCATCAATTTCTAAGGAAGTGGTTGATTGATCATCCAAAATTTTTGTCAAACGAAGTTTACATTGCTGGTGATTCATATTCTGGCATTCCCGTTCCTGCAATTGTTCTGGAAATTGCACAAGGTAATGAAGAAGGGTTTCAACCAAGGATAAATATCCAGGGATACCTTTTGGGGAATCCAATAACAACTAGAAGGGAGGGAAACTATGGAATCCCTTTTGCTCATGGAATGGCACTTATTTCTGATGAACTATATGAGCTTGTATCAGGACTTTCTGCTTACAATATTTTGGAGCTGTTGTGTGAGTTCGATCATTCTCTACCTCCTTTGAGAAGATCCCTAAATGAGAAATTTTCTGGAAAGCATTTCTTGAAAACTGATCTCGAACTGCCAAACATAAAATGCCCGACTTATACATCATTCCTATCTGCTTATTGGGCAAATGATGATAATGTTCGAACTGCACTTAATGTTCGCAAGGGTGCGGGCCACACAGCTCCGTTGTACAAATCGGAAGAATGTTTTGACATGTTCAGCAGATGGATTTCTAAAAGGGCTTTGTAG 1059 0.4098 MGKLNSIVTSSDLVHRGILLFLILLSQYSIEPASCASRVKFLPGFEGPLPFLLETGYVGVGESEDVQTFYYFIESDNNPKEDPLILWLSGGPGCSSLTGLFLEIGPLALKQEEYNGDAPNLILRNQSWNKVSNIIYVDLPVFSGFTYARTELAAQSSDKLLVRQTHQFLRKWLIDHPKFLSNEVYIAGDSYSGIPVPAIVLEIAQGNEEGFQPRINIQGYLLGNPITTRREGNYGIPFAHGMALISDELYELVSGLSAYNILELLCEFDHSLPPLRRSLNEKFSGKHFLKTDLELPNIKCPTYTSFLSAYWANDDNVRTALNVRKGAGHTAPLYKSEECFDMFSRWISKRAL 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01256 352 Pfam Serine carboxypeptidase 43 323 IPR001563 GO:0004185|GO:0006508
Vimu10g01256 352 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 197 IPR001563 GO:0004185|GO:0006508
Vimu10g01256 352 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Vimu10g01256 352 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Vimu10g01256 352 Gene3D alpha/beta hydrolase 33 326 IPR029058 -
Vimu10g01256 352 FunFam Serine carboxypeptidase-like 19 33 263 - -
Vimu10g01256 352 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 339 IPR001563 GO:0004185|GO:0006508
Vimu10g01256 352 SUPERFAMILY alpha/beta-Hydrolases 39 349 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01256 Vimu-Chr10 12655680 12668593 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01256 33 62 Calmodulin-binding Proteins AT2G22960 70.000 1.62e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01256 K16296 - gmx:100794342 416.772