Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01239 ATGATGAGAATCGCTGCAAGCGCAAAGAGACTTCTTCGAACGCCGTCGTTGGAGGTGTCACCGTTGGGGGTTAGGGTTCTGCCGCGCCTCTACCATGAGAGGGTGGTGGACCACTACGACAACCCCCGCAATGTCGGATCCTTCGACAAGAACGACCCCACTGTTGGAACTGGTCTTGTTGGGGCACCCGCGTGTGGCGACGTAATGAAACTCCAAATTAAGGTTGACGAGAAAACTGGAAAGATCGTCGATGCTCGCTTCAAAACCTTCGGTTGTGGATCCGCCATTGCTTCTTCCTCCGTCGCTACTGAATGGGTGAAGGGAAAGCAAATGGAGGAAGTTCTGTCAATTAAAAACACTGAAATTGCGAAGCATCTTTCACTTCCACCCGTCAAGCTTCACTGCAGCATGCTTGCAGAGGATGCTATTAAAGCAGCTGTTAAGGATTATGAAGCTAAACGTGCCTCAGCAACTACTGATGGGCAGGGAACAACTTCAGAGAAAACTGCCACTGCTTGA 519 0.5048 MMRIAASAKRLLRTPSLEVSPLGVRVLPRLYHERVVDHYDNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKVDEKTGKIVDARFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRASATTDGQGTTSEKTATA 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01239 172 Gene3D - 30 171 - -
Vimu10g01239 172 FunFam Iron-sulfur cluster assembly protein 31 170 - -
Vimu10g01239 172 NCBIfam Fe-S cluster assembly scaffold IscU 31 154 IPR011339 GO:0005506|GO:0016226|GO:0051536
Vimu10g01239 172 SUPERFAMILY SufE/NifU 30 154 - -
Vimu10g01239 172 CDD IscU_like 30 146 IPR002871 GO:0005506|GO:0016226|GO:0051536
Vimu10g01239 172 Pfam NifU-like N terminal domain 31 155 IPR002871 GO:0005506|GO:0016226|GO:0051536
Vimu10g01239 172 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 9 162 IPR002871 GO:0005506|GO:0016226|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01239 Vimu-Chr10 12407735 12409083 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01239 K22068 - gmx:100806169 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01239 10 12407735 12409083 Vimu10g01239 10 12407735 12409083 ECH
Vimu7g00663 7 6632677 6634509 Vimu10g01239 10 12407735 12409083 PCT