Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01221 ATGACCTTGTTTGGAATTTGCAGATCAGAAGAGATAACAATGGCAAAACAGACATCTGAAGTGGCCATTGAAGAGCTGAAGAAGCTTCTCAGAGAAGAAGAGTTTAAAGTTGAAGAAGTGATAGCTGAGTTACAAAAACATGATGAGCCTGCTTTGCAAAGAATCATACTCGGATTCACTTACTTCAAGATCAACAATTTCGATAAGAACCCGGATCTGTATAACAAACTTGCCAATGGCCAAAGCCCCCAGTATCTGGTGTTTGCTTGTTCTGACTCTCGAGTGAGTCCTACAACTATCCTCCATTTCCAACCTGGAGAAGCTTTCATGGTCCGCAACATTGCTAACATGGTTCCTCCATTTAATCAGCTAAGGCACAGTGGAGTTGGCGCAGCCATTGAGTATGCTATCACTGCTCTCAAGGAATCTCAACATATACAAGACCAACCATATGGTTTTACAGGTACCAAACATTCTGGTCATTGGCCACAGTCGCTGTGGTGGAATCCAAAGGCTTATGAGTCATCCAGAAGATGTGACTTCATAGATGATTGGGTGAAAATTGGTTTGCCAGCTAAACTGGCCGTTCTGAAAGAATATGAAGGCTATGATTTCAAGGACCAATGCAAATTCTGTGAAAAGGAGTCAGTGAATAACTCGTTAGTGAACCTGAGGACATACCCATATGTTGAAAGAGGAATAAGGAACAAGACCATAAGACTGTTGGGAGGTTACTATGATTTTGTGAAGGGAGAATTCAAGCTTTGGAAGCACGTGACTCATGTCACTGAACCCATTACTATCCCTCTCTCAAACCATCAGTGA 825 0.4218 MTLFGICRSEEITMAKQTSEVAIEELKKLLREEEFKVEEVIAELQKHDEPALQRIILGFTYFKINNFDKNPDLYNKLANGQSPQYLVFACSDSRVSPTTILHFQPGEAFMVRNIANMVPPFNQLRHSGVGAAIEYAITALKESQHIQDQPYGFTGTKHSGHWPQSLWWNPKAYESSRRCDFIDDWVKIGLPAKLAVLKEYEGYDFKDQCKFCEKESVNNSLVNLRTYPYVERGIRNKTIRLLGGYYDFVKGEFKLWKHVTHVTEPITIPLSNHQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01221 274 Pfam Carbonic anhydrase 85 141 IPR001765 GO:0004089|GO:0008270
Vimu10g01221 274 Pfam Carbonic anhydrase 175 252 IPR001765 GO:0004089|GO:0008270
Vimu10g01221 274 PANTHER CARBONIC ANHYDRASE 178 259 IPR001765 GO:0004089|GO:0008270
Vimu10g01221 274 Gene3D Carbonic anhydrase 41 147 IPR036874 GO:0004089|GO:0008270
Vimu10g01221 274 Gene3D Carbonic anhydrase 157 267 IPR036874 GO:0004089|GO:0008270
Vimu10g01221 274 SMART Pro_CA_2 78 257 IPR001765 GO:0004089|GO:0008270
Vimu10g01221 274 SUPERFAMILY beta-carbonic anhydrase, cab 172 266 IPR036874 GO:0004089|GO:0008270
Vimu10g01221 274 CDD UDM1_RNF168_RNF169-like 10 55 - -
Vimu10g01221 274 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 90 97 IPR015892 GO:0004089|GO:0008270|GO:0015976
Vimu10g01221 274 Coils Coil 12 43 - -
Vimu10g01221 274 SUPERFAMILY beta-carbonic anhydrase, cab 48 141 IPR036874 GO:0004089|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01221 Vimu-Chr10 12130298 12133014 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01221 K01673 - gmx:547671 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01221 10 12130298 12133014 Vimu10g01221 10 12130298 12133014 ECH