Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01163 ATGAAGGGTTTGATTCTCTTTAGCATAGTTGTTGCTTGTGGTTTTGTTGAAAATGTTGTTTCATACAACAATCAATTTCCTTATAGAACCATTATAAACTTTGGTGACTCGTTAAGTGATACAGGAAACTCTGCAACTAACGAACCATTTAAAGCTGATAGTCCATACGGTTCAACATATTTTAAACATCCTGCAGGACGTATGTCAAATGGAAGACTGATAATAGATTTTATAGTCAAAGCATATGGGTTACCATACTTGCCAGCTTATTTAAATTTAACGAAAGGACAACATGTTAAGCAAGGAGTAAACTTTGCATATTCTGGTGCAACTGCACTTGATAAAAGCTTTTTTGATAAAAGAGGACTCAATGTACCAGCAGCTGCTTATGCATTAAATACTCAACTTGATTGGTTTCATAAGATCAAGCCCTCGCTTTGTACAGGCAAAGAAGACTGTGCTAATTTCTTTAAGAACTCATTAGTTCTAGTTGGTGAGATTGGTGGGAATGACATTAATGCAATTATCCCACATAAAAATGTTACAGAAATTCGAGAGTTTGTTCCAGATATTATTAAAGCGATTACAAATATGACTTCTACACTAATTTCAGAAGGAGTTGTTGAACTAGCGATTCCAGGGAACTTTCCAATTGGGTGTAATACCTATGTTTTGAATACGGTGAATAGTGATAAAAAAGAAGATTATGACGAATTTGGGTGTTTGAGAAATTACAATGCTGCCATCAAGTACTATAATGATCAACTCAAAACGGCTATAGACGAATTGAGACACAAGAACCCTCATGTTAACATAATATATTTTAATTATTATAGTGCAGCTAGACGTTTATTTGAAAAACCAGAACAATATGGCTTTAAGGGTAAACCTGACACCTTCAAAGCATGTTGTGGAAAGGGTGGAAGATACAATCTTAATGAAGTTTGTGGATTTGGTGATTCAGTAATTTGTGATGCACCTGTTAAACACATAAATTGGGATGGATTTCATTTCACTGAAGCAGGTTATAGATCTGTAGCACAAGGACTTCTTGAGGGTCCTTATGCTACTCCTCCTCTTAAAACTCCTCCATTCAAGATTCCAAAGGAATGA 1113 0.3513 MKGLILFSIVVACGFVENVVSYNNQFPYRTIINFGDSLSDTGNSATNEPFKADSPYGSTYFKHPAGRMSNGRLIIDFIVKAYGLPYLPAYLNLTKGQHVKQGVNFAYSGATALDKSFFDKRGLNVPAAAYALNTQLDWFHKIKPSLCTGKEDCANFFKNSLVLVGEIGGNDINAIIPHKNVTEIREFVPDIIKAITNMTSTLISEGVVELAIPGNFPIGCNTYVLNTVNSDKKEDYDEFGCLRNYNAAIKYYNDQLKTAIDELRHKNPHVNIIYFNYYSAARRLFEKPEQYGFKGKPDTFKACCGKGGRYNLNEVCGFGDSVICDAPVKHINWDGFHFTEAGYRSVAQGLLEGPYATPPLKTPPFKIPKE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01163 370 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 18 359 - -
Vimu10g01163 370 Pfam GDSL-like Lipase/Acylhydrolase 31 348 IPR001087 GO:0016788
Vimu10g01163 370 CDD SGNH_plant_lipase_like 30 354 IPR035669 -
Vimu10g01163 370 SUPERFAMILY SGNH hydrolase 29 351 - -
Vimu10g01163 370 Coils Coil 242 262 - -
Vimu10g01163 370 Gene3D SGNH hydrolase 17 353 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01163 Vimu-Chr10 11263490 11265381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01163 34 353 Acyl Lipid Metabolism Gene Families AT4G10950 29.179 1.76e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01163 - - pvu:PHAVU_009G1802000 527.709