Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01153 ATGAGGATCCGGAAAAGGCCAGTGCTTTTCTTGTCGTCGGTCTCGTCGTTGGCTCTGTCAGATCCACACCTGATCAGTCGGTCGTCGGTGGTGGTGCAACTAAGCGAGGCTGCTTCCACGGTAGCAAAACGTTCTTCTTCTCCTTCTTCTACAGTGCTCCATCGCCATGCTGCTTCATGGAGCTTGGATCGTTGCCAACCATTTAATCAGTCTCTCCCTTCGATCGGGAAGCCAAGCAACGGCTGGGATGATCCCTCCGACATCGAGGTTTTTGATGGAAGGGAAGAAAGTGGAAAAGACTCTGGAGAGAAGGCAATCATACTAGGGCATCAAAGTTTCTCTCTTTCAGCCAATATGGTAACTGCAGATGAGAGGGTCGTCGCTGTGATCATGGTTGGAGGACCCACTAAAGGACAACCAATGGTTCATCATCCTATTTCTGCTTGTAAAAGGATTCCTAATTTGGCTCAGATTTATCTGATTGGTTTCTATGAGGAACGTGAATTTGCCTTATATGTATCTTCTATCTCAAATGAGCTTAAAATCCCTGTTAGATACTTGAAGGAAGACAGACCACATGGTTCGGCTGGTGGCCTTTATCACTTTAGAGATCTGATCATGGAAGATGATCCGTCACATATCTTCTTGCTGAACTGTGATGTATGCTGCAGTTTTCCACTGCCAGAAATGCTTGATGCTCACAAAAGATATGGTGGGATGGGAACAATACTAGTTGTGAAGGTTTCTGCAGAATCAGCTAGCGAATTTGGGGAATTAGTTGCTGATCCAACAACTAATGAACTATTGCATTATACAGAGAAACCTGAAACTTTTGTAAGTGATCGTATAAACTGCGGTGTGTACATATTTACACCAGATATCTTTACAGCCATAGAGGGTGTTTCTACTCAGCGCAAAGACAGAGCTAACCTAAGACGTGTTTCCAGCTTTGAAGCAATGCAGCCAGACCCAAGGATTCTTCCAGCAAATTATGTCAGATTGGATCAAGATATCCTCTCACCTCTTGCGGGGAAGAAACAGTTATATATTTATGAAACCAATGACTTTTGGGAACAAATCAAAACTCCAGGGATGTCCATAAAATGTTCTAGCTTGTATCTTGCCCAATTTCGCCACACATCTCCCCATCTACTAGCAAATGGAGATGGTATTAAGAAAGCCGGCATCACTGGTGATGTTTATATTCACCCGTCAGCAAAAGTGCATCCATCTGCTAAGATTGGTCCAAGTGTATCAATATCTGCAAATGCTCGTATTGGAGCCGGTGCAAGGCTAAAAAATTGTATCATCCTTGATGATGTAGAGATCAAGGCAGGTGTACAGAAAATGCTGTTGTTAGTCATGCAATTGTTGGATGGAAATCCTCTATTGGACTATGGGCACGTGTCCAGGCAAGCTAGTGGAGATTACAATGCAAAGCTTGGGGTAACTATACTTGGTGAATCTGTAACAGTTGAGGATGAGGTGGTGGTTTTTAATAGCATTGTTCTGCCACATAAGACCCTAAATGTGGGTGTTCAAGATGAAATTCTTTTATAG 1560 0.4333 MRIRKRPVLFLSSVSSLALSDPHLISRSSVVVQLSEAASTVAKRSSSPSSTVLHRHAASWSLDRCQPFNQSLPSIGKPSNGWDDPSDIEVFDGREESGKDSGEKAIILGHQSFSLSANMVTADERVVAVIMVGGPTKGQPMVHHPISACKRIPNLAQIYLIGFYEEREFALYVSSISNELKIPVRYLKEDRPHGSAGGLYHFRDLIMEDDPSHIFLLNCDVCCSFPLPEMLDAHKRYGGMGTILVVKVSAESASEFGELVADPTTNELLHYTEKPETFVSDRINCGVYIFTPDIFTAIEGVSTQRKDRANLRRVSSFEAMQPDPRILPANYVRLDQDILSPLAGKKQLYIYETNDFWEQIKTPGMSIKCSSLYLAQFRHTSPHLLANGDGIKKAGITGDVYIHPSAKVHPSAKIGPSVSISANARIGAGARLKNCIILDDVEIKAGVQKMLLLVMQLLDGNPLLDYGHVSRQASGDYNAKLGVTILGESVTVEDEVVVFNSIVLPHKTLNVGVQDEILL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01153 519 Gene3D Hexapeptide repeat proteins 385 514 - -
Vimu10g01153 519 Pfam Nucleotidyl transferase 138 308 IPR005835 GO:0009058
Vimu10g01153 519 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 135 518 - -
Vimu10g01153 519 CDD M1P_guanylylT_A_like_N 128 373 - -
Vimu10g01153 519 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 128 375 IPR029044 -
Vimu10g01153 519 SUPERFAMILY Trimeric LpxA-like enzymes 343 504 IPR011004 -
Vimu10g01153 519 SUPERFAMILY Nucleotide-diphospho-sugar transferases 123 447 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01153 Vimu-Chr10 11116395 11123406 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01153 K00966 - gmx:100780801 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01153 10 11116395 11123406 Vimu10g01153 10 11116395 11123406 ECH