Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01146 ATGGCCAATCGCTGGCTCAGACCCGAGGTGTATCCGCTGTTCGCCGCTGTTGGTGCTGCTATTGGGATCTGTGGGTTTCAACTGGTTCGTAATATCTTGATCAACCCTGAAGTCAGGGTGAACAAGGAGGGAAGGAAGGCCGGAGTGTTGGAGAACTTTGCTGAGGGAGAGAAGTATACCGAGCATTCCCTGAGGAAGTATGTGCGCAACAGATCTCCAGAGATTATGCCCTCCCTCAACAGCTTCTTTGCTGACCCAAGGTTTTCTCGAAACGCCCCAGGAACCCAACAATTGGCGCCCACCGTGGGGCAAGGATTCAAGAATTCCCAAGGAGCAATGACAACCAAGTTCGACGTGGAGAAATTCAACGGCGCTAATGACTTCGGGCTGTGGAAGATCAAGATGGAGGCAATCTTGATACAGCAGGGATGTGATGAAGCGTTGAAGGGTGAGTCGAGGATGAGGGATGCCATGACTCAAGAAGAGAAGAAGAAGATGGGAGATAAGGCAAGGAGTGCAATCATCTTGTGCCTTGGTGATAAGGTACTGAGGGAGGTTGCGAAGGAGAAGACTGCCGCTGAAATCTGGGCAAAACTAGAGTCTCTGTACATGACGAGATCGTTGGCTCATAGGTTGTGCCTGAAGCAGCAACTCTTTTCGTTCAAGATGTCAGAATCAAGAACGATAGAGGAGCAGATTGCAGAATTCAGCAAGATAGTTGATGATCTGGAGAATATTGAAGTAAAGTTGGAGGATGAAGATAAAGCTGTCATCCTGTTGAATGCGCTTCCAAAAACCTTCGAGCATTTCAGGGATGCGTTACTCTACGGGAAAGATCAAGTGATCACGTTAGAGGAGGTTCTGACGTCAATTCGAACCAAGGAGTTCCAAAAACTCCAAGATTCGAAGACAACCGAGGAAGGAGCGTCCGGATTGATCTCGGTGAAAGGGAAAGGGAAGAAGCAGTCTGGAAAAGAGAAGAAGTTGAATCCGGACGGTACGAAGCAGGTGCGTTGCTTCAAGTGCCAGAAGATGGGTCATATCAAGAAGTTCTGCCCGGAGAAAGGAAAGGCCGGTCGGCCACAAGAAACCGCTGATGTGGCAGAGGCGTCTGAGGGATATGAGTCGGCTGGAGTGCTGGTGGCTTCGTCTGAAGATTCTCAAAGGAGTTGGGTCATGGATTCCGGCTGCTCCTATCACATGTGCCCGGTGAAGGAGTTTTTTGAGAATCTTGATCAGAAAGAGCATGGTAATGTACTGCTCGGAAATAACAAAGCTTGCCGAGTGCAAGGTGTGGGGTCGGTGAGGCTGAAGATGTTTGACAATCGTGAGATGGTGTTGCAGGCTGTTAGGTATGTGCCCGAACTAAAGAGAAATTTGATTTCTATTAGTGCATTTGATCTTGGAGGTTACACCACTAAAGTTAAAGATGAAGTAATGAGGGTTTGTTCTGGAGATTCTGTGGTTGCCAAAGGCAGAAGGAGGAACGACTTGTACATTCTGGAGGGATCAACTGTCATTGGTCATGTCTCAGTAGCAAGTGGGACCGAGAATACCGCCCGGTTATGGCACTTGAGGATGGGACACATCAGTGAGAAGGGTCTTGAAGAATTGGAAAAGCAAGACTTGCTTCTGGGAGACAAACTGCAGAAGCTGGATTTCTGTGACCATTGTGTCTTAGGGAAATCACACAGAATACCGTTCGGAAAAGGGAAACACTCAACCGAACGCCCCTTTGAATATGTCCATGCTGACTTATGGGGACCGGCAAGAACCTTAACTCATGGTGGAGGAGCGTATTTCCTAAGTATAATTGATGACTTCTCAAGGAGAGTGTGGATTTACGTTCTAAAAAATAAGTCTGAAACGTTTCAGAAGTTCAAAGAGTGGCACACACAGATTGAGAACCAATTGGGGTGTAGGCTGAAATGCCTAAGAATCGATAATGGGCTGGAGTTCGTTTCAGAGGAGTTTAATGGTTTTTGCAAAGAGAAAGGGATCAGGAGGCACAGAACGGTCGTTGGAACTCCGCAACAGAATGGCTTGGCCGAACGGATGAATAGAACCATTCTGGAGAGGGTCCGGTGCATGTTGCTGGGATCAGGGTTGTCAAAGGCTTTCTGGGGAGAGGCTGCCAATACGGCCGTCTATCTGATTAACAGGAGTCCGTCTTCAGCTATCAATTTTAAAACGCCAATGGAAGTGTGGAGTGGACGACCGGCTGATTACTCACACTTGAGAGTGTTTGGTTCTTTGGCGTTTGCTCATGTCAGAGGTGATAAGCTGGATTCCCGGGCGGCGAGATGTATCTTTCTTGGATACGCCGACGGAGTTAAGGGATACAGGTTATGGAGGTTAGATTCACCTTCAAAACTAATCATTAGTAGGGATGTCATTTTTGATGAAACAAGGATGGCGATGCACCCTGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGCACGCCCGGTGGGACTGAGGAAAACCAAACGGGTGAAGGGCAGGTTGAAAACGGTCGGACGATAGAGGAGAACCGATCGGATGAATTTCGAACAGACCTTGGTGATGATACAGATCGTATGTCTGGCGAGGGAAGTCATGGAAAAGCTGCTGGTGTTGATTTGAGAAACTATCAGCTTGTTCGTGACAGAGAAAGAAGGATCTCCAAGCCAACCAAACGGTTTGGAGAGGCGGATCTAATCTGCTACGCCCTGAATGCTGCTGAAGATCTTAACCGATCGGATGAACCGAGAAGTTATAAGGAGGGTGCTATGGAAGAAGAGTTGGAGGCTTTGAAAAAGAATAGCACCTGGAGATTGGTGGATCTGCCGAAGGGTAAGAAGGTCATAGGTTCGAAATGGATTTTCAAGAAAAAGGAAGCTACACCGGGCGGTGAGAAAGCGAGGTACAAAGCTAGGCTTGTTGCCAAAGGCTTTACTCAGATTGAAGGCGTAGACTATCATGAGATCTTTGCTCCAGTGGTTAAGCATTGTTCGGTCAGAGTTCTAATGGCAATAGTTGCGCATTGCAATTTGCATCTTGAACAGTTGGACGTTCGGACAGCTTTTCTGCACGGCGATTTGGAGGAAACCATCTATATGAAGCAACCGGACGGTTTCGCTGTGGATGATAGGGTGTGTCTGTTGCAGAAGTCACTTTATGGCTTGAAGCAAAGCCCAAGGCAGTGGTACAGGAAATTTGATGACTTTCTGATAAAGCTGAACTTCAAGCGGTGCAATTATGATGACTGTGTTTACACTCTGAATCATGACGGTGAAATGTTATATCTCCTGCTTTATGTGGATGATATCCTAATTGCTAGCAGTGACATGGGCATGATCGGTGAGACGAAAGCAAGGTTGGCGGATGCTTTCGAAATGAAAGAGCTAGGGGAAGCAAGGCGGATTTTGGGCATAGACATTAAAAGGGATAGACCGGGCGGTAACCTTTTTCTGTCTCAGGAGTGCTATTTGCAGAAGGTAATTTCAAGGTATCGGATGGCTGAATCTAAAATGGCCAGCACGCCGATCGGTCAACACTTGAAACTTACCAAGGAGCAATGCCCAAAGACCGAGGAAGAAAGAAAGAAGATAGAATCTGTTCCATTTTCAAATGAGATTGGGAGCATTATGTACGGCATGGTCTGCACAAGACCGGACGTGGCGCACGGTGTTAGTGTTCTCAGTCAGTTCATGGTTAATCCTGGACCAACACACTGGGAAGCGTTGAAGTGGATGCTCAGATATATACGGGGGTCTCTCGGTACTGGATTGTCCTTCCAGAATAACTTTCAAGGTGGAGGTTATATTGAAGGTTTTGTTGATTCTGACTTTGCCGGATGCATGGACACTAGGAAATCCCGGTCGGGATATGTGTTTACACTGTTTGGGACTGCTGTTAGCTGGAGGTCTACACTACAGTCGGTTGTGGCTTTGTCAACTACGGAAGCTGAGTACTATGCTCTTGCTGAAAGGGTTAAGGAGGCACTGTGGTTGAAAGGTTTGGTTCGGGAACTTGGTTTTGATCAGAAGTCTGTATGTGTTCACTGCGACAGCCAGAGTGCTATTCATCTGGCCAATCATCAGATTTATCATTCCAGAACCAAGCATATTGACGTCAAGCTGCACTTTGTCAGAAGCATTGTTGAATCCGGTGACGTTCAAATCTGCAAAATTGCATCCGAAGAGAATCCTGCAGATATGTTAACAAAGCCGCTCGCTAAGGAGAGGTTTCTCTTGTTGTTGTCCAGGATTGGGTGTCTACCGGGTCCTTTGATCTCGCGCGAGAAGCTGGCTAGGGGGCACTCACCTGCATCTTCTCCTTTCCTGGTTCTAGGGAGAGAGAGGCGTTGTTCTTTGTCTCGTTTTTTGGTTTTGGTTTTGGGTTTTTGTAAGGCAAAGGAGGAGGAGAGGAGGTTCCTTTCCTCTTTTTTTCTGGTAGTTCTGCAGGGAGGTTGGTTCCAGCGTCTAGCAATGCGAGGAGCTCGGTTCGTCAGCGTTCTCGTGGTGATCGGGATCGCGGAAGCTCTCTCTTTTGAAGCAACCTGTGACGGTAGCAGAATGGGATGCATTCTTGATTCGCGTTTCTGA 4617 0.4746 MANRWLRPEVYPLFAAVGAAIGICGFQLVRNILINPEVRVNKEGRKAGVLENFAEGEKYTEHSLRKYVRNRSPEIMPSLNSFFADPRFSRNAPGTQQLAPTVGQGFKNSQGAMTTKFDVEKFNGANDFGLWKIKMEAILIQQGCDEALKGESRMRDAMTQEEKKKMGDKARSAIILCLGDKVLREVAKEKTAAEIWAKLESLYMTRSLAHRLCLKQQLFSFKMSESRTIEEQIAEFSKIVDDLENIEVKLEDEDKAVILLNALPKTFEHFRDALLYGKDQVITLEEVLTSIRTKEFQKLQDSKTTEEGASGLISVKGKGKKQSGKEKKLNPDGTKQVRCFKCQKMGHIKKFCPEKGKAGRPQETADVAEASEGYESAGVLVASSEDSQRSWVMDSGCSYHMCPVKEFFENLDQKEHGNVLLGNNKACRVQGVGSVRLKMFDNREMVLQAVRYVPELKRNLISISAFDLGGYTTKVKDEVMRVCSGDSVVAKGRRRNDLYILEGSTVIGHVSVASGTENTARLWHLRMGHISEKGLEELEKQDLLLGDKLQKLDFCDHCVLGKSHRIPFGKGKHSTERPFEYVHADLWGPARTLTHGGGAYFLSIIDDFSRRVWIYVLKNKSETFQKFKEWHTQIENQLGCRLKCLRIDNGLEFVSEEFNGFCKEKGIRRHRTVVGTPQQNGLAERMNRTILERVRCMLLGSGLSKAFWGEAANTAVYLINRSPSSAINFKTPMEVWSGRPADYSHLRVFGSLAFAHVRGDKLDSRAARCIFLGYADGVKGYRLWRLDSPSKLIISRDVIFDETRMAMHPENSGSEKKILVEVEHTTNGAGTPGGTEENQTGEGQVENGRTIEENRSDEFRTDLGDDTDRMSGEGSHGKAAGVDLRNYQLVRDRERRISKPTKRFGEADLICYALNAAEDLNRSDEPRSYKEGAMEEELEALKKNSTWRLVDLPKGKKVIGSKWIFKKKEATPGGEKARYKARLVAKGFTQIEGVDYHEIFAPVVKHCSVRVLMAIVAHCNLHLEQLDVRTAFLHGDLEETIYMKQPDGFAVDDRVCLLQKSLYGLKQSPRQWYRKFDDFLIKLNFKRCNYDDCVYTLNHDGEMLYLLLYVDDILIASSDMGMIGETKARLADAFEMKELGEARRILGIDIKRDRPGGNLFLSQECYLQKVISRYRMAESKMASTPIGQHLKLTKEQCPKTEEERKKIESVPFSNEIGSIMYGMVCTRPDVAHGVSVLSQFMVNPGPTHWEALKWMLRYIRGSLGTGLSFQNNFQGGGYIEGFVDSDFAGCMDTRKSRSGYVFTLFGTAVSWRSTLQSVVALSTTEAEYYALAERVKEALWLKGLVRELGFDQKSVCVHCDSQSAIHLANHQIYHSRTKHIDVKLHFVRSIVESGDVQICKIASEENPADMLTKPLAKERFLLLLSRIGCLPGPLISREKLARGHSPASSPFLVLGRERRCSLSRFLVLVLGFCKAKEEERRFLSSFFLVVLQGGWFQRLAMRGARFVSVLVVIGIAEALSFEATCDGSRMGCILDSRF 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01146 1538 SUPERFAMILY Retrovirus zinc finger-like domains 329 359 IPR036875 GO:0003676|GO:0008270
Vimu10g01146 1538 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Vimu10g01146 1538 MobiDBLite consensus disorder prediction 848 873 - -
Vimu10g01146 1538 Pfam gag-polypeptide of LTR copia-type 165 294 - -
Vimu10g01146 1538 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 944 1186 IPR013103 -
Vimu10g01146 1538 Gene3D - 571 749 IPR036397 GO:0003676
Vimu10g01146 1538 SUPERFAMILY Ribonuclease H-like 576 749 IPR012337 -
Vimu10g01146 1538 Gene3D - 314 367 - -
Vimu10g01146 1538 MobiDBLite consensus disorder prediction 825 880 - -
Vimu10g01146 1538 Pfam Integrase core domain 576 677 IPR001584 GO:0015074
Vimu10g01146 1538 Pfam NADH-ubiquinone reductase complex 1 MLRQ subunit 7 74 IPR010530 -
Vimu10g01146 1538 MobiDBLite consensus disorder prediction 310 332 - -
Vimu10g01146 1538 SUPERFAMILY DNA/RNA polymerases 943 1386 IPR043502 -
Vimu10g01146 1538 Pfam GAG-pre-integrase domain 497 563 IPR025724 -
Vimu10g01146 1538 PANTHER GAG-POL-RELATED RETROTRANSPOSON 481 1430 - -
Vimu10g01146 1538 ProSiteProfiles Integrase catalytic domain profile. 574 740 IPR001584 GO:0015074
Vimu10g01146 1538 CDD RNase_HI_RT_Ty1 1280 1418 - -
Vimu10g01146 1538 Coils Coil 233 253 - -
Vimu10g01146 1538 ProSiteProfiles Zinc finger CCHC-type profile. 338 354 IPR001878 GO:0003676|GO:0008270
Vimu10g01146 1538 MobiDBLite consensus disorder prediction 828 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01146 Vimu-Chr10 11076842 11089300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01146 920 1388 Receptor kinase-like Gene Family AT4G23160 37.113 2.11e-90 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01146 - - bna:106351154 1053.89