Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01076 TTGGATCTGATTGACTCGAATTGGGAAGGTAGGGTAGAGAAATTGGGAACAATGAGTCAAGTATTTGACGGGTACGAGCGACAATACTGTGAACTATCAGCGAATCTTTCGCGGCAATGCACTGGGGCTTCCTCTCTTGATGGAGGTAATGCAATCAATCTCTTTCTTCACACACACTCTTCAATTCGGAAAATGGACCTTGAGGCTAGGAGTTTGCAGCCTAGTATGAAGGCAACTCTTCTTGCCAAGTTAAGGGAATACAAAACTGATTTAACCAATTTGAAGACCGAAGTTAAGCGAGTTACAACATCTACTGTCAGTTTCGCTGCTAGAGATGACTTGTTGGAATCAGGAAGTGCTGATACACTGGCGGTATCAAATGATCAAAAGGGAAGACTTCTGATGTCTACTGAAAGACTTAATCAGTCTACTGATAGAATAAAGGATAGCAGAAAAACAATGCTGGAGACTGAGGAGCTTGGTGTCTCTATCCTCCAAGATTTGCATCTACAGCGACAATCCCTACTCCATGCCCATAAGACACTCAATGGGGTGGATGATAACATCAGCAAAAGCAAGAAGATTTTGTCAGCCATGTCAAGAAGGATGAGCAGGAACAGATGGATTGTAGGCTCCTTATTGACAGCTATGGTCGTTGCAGTTATAATCATTTTATATTTCAAGCTGACTCATTAG 696 0.4224 MDLIDSNWEGRVEKLGTMSQVFDGYERQYCELSANLSRQCTGASSLDGGNAINLFLHTHSSIRKMDLEARSLQPSMKATLLAKLREYKTDLTNLKTEVKRVTTSTVSFAARDDLLESGSADTLAVSNDQKGRLLMSTERLNQSTDRIKDSRKTMLETEELGVSILQDLHLQRQSLLHAHKTLNGVDDNISKSKKILSAMSRRMSRNRWIVGSLLTAMVVAVIIILYFKLTH 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01076 231 CDD SNARE_Vti1 137 197 - -
Vimu10g01076 231 FunFam Vesicle transport through interaction with t-SNAREs homolog 1A 18 108 - -
Vimu10g01076 231 SUPERFAMILY t-snare proteins 23 102 IPR010989 GO:0016020|GO:0016192
Vimu10g01076 231 Gene3D - 127 207 - -
Vimu10g01076 231 Gene3D - 16 107 IPR038407 -
Vimu10g01076 231 Coils Coil 77 104 - -
Vimu10g01076 231 FunFam Vesicle transport through interaction with t-SNAREsB 127 207 - -
Vimu10g01076 231 Pfam Vesicle transport v-SNARE protein N-terminus 62 100 IPR007705 GO:0006886|GO:0016020
Vimu10g01076 231 SUPERFAMILY SNARE fusion complex 140 199 - -
Vimu10g01076 231 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 54 226 - -
Vimu10g01076 231 Pfam Snare region anchored in the vesicle membrane C-terminus 138 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01076 Vimu-Chr10 10170033 10172389 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01076 K08493 - gmx:100801744 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01076 10 10170033 10172389 Vimu10g01076 10 10170033 10172389 ECH