Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01047 ATGAGGGTGCTGGAGGCTGCAATCAAGGCAGACCAAAGCGTTAAGAAAAGTTCTCTTGACATTCAGCCATTCAAACCTGGCTATTCTGCGACAACAACTGTCTACCATCCTGGAGATACTTCAATTGATATCAGTGATGACTGGGAAAGCTCTAGTATTCCTTTAGATTTGCACAATTCTCGACTTTTGGCTATTGCAGCTGTAGAGCACCAAGTTCCAGAGATTCGTGAAGGTTATGCCAATGCTGCTGGCACTAATGGAATTACATTGTGGCACTCGGTTGGTCTAATTCAATGGGATGCTCCAGATCCTGTGATTGATACATGCAATTCATTGTACTGTGATGATAAAAATGATAGAACAGTGGAATTTCGGAATACATCATATCGCTTGCCAGCTTGGTCAGTTAGCATTCTTCCTGATTGCAAGAATGTAGTGTTCAACACAGCGAAGGTTAATCCCCAGACAAATGTAGTTGCAATGATTCCTAGAAGTTTGCAGCAATCAAATATAGGTGTAAATTCTTTGATATGGGTCATTGTGAAGGAGAAACCAGGAATATGGGGAACAACAGACTTTGTCAAAAATGGTTTTGTTGATTTCATCAATACTACCAAAGATACCACTGACTACCTATATGGCATACCACAAGAATATCAAGTTGGCTTACAGACAGCTGGACCCTTTTATGACTTTATGGGGGCAGGACTCACAAGTGTGAAGATTAAGGGATTGAACAATGGGATGATAGACTTGTCTTCATATGCTTGGACTTACAAGATTGGAGTGCAAGGAGAACATCTAAAGCTATATCAGGGAGATGGGTTGAGTAATGTCAACTGGACATCTACTTTAGAACCACCAAAAATGCAGCCATTGACATGGTATAAGACTATTGTGCATGCTCCACCTGGAGATGAACCAGTTGGATTGGATATGTTACATATGGGCAAAGGTCTAGCCTGGTTAAATGGAGAATTTGTTGAGAGTTATATAACAACAAACAAGAAAATTGATGCTAGTGGGAATATACTTGGTTGTTTTTGCTTCTTGCAGGTTGTAATGCCAGACTTGAATCGGTCTTTTGAAGAACACAAGCCAATAGGCAGAGAAAACATTTCTGAATCCAAAGAGTTAGCTTATATACTACAAGAGATTGAAACCATGACTCTTGCTTGGAGCTTGAGCCAAGCGGAATTGGTGGAGGGGGAGACAGAAGAGGGTGACTTAACTCCCAATAAAGAGGGACCTGTAGAGGGGAGAGAGCTGCTGGAAGCATTGAAAGACATCAAAGATCATCTTTTCTGGGCTTATAGTTTTGAAAAAGAGTTAATGGCTCTTTTACTTCTGAGGAATGTCGCTCCCCTCTTCAATGCTGATGTGGAGAAAGTTTTAACGTATTTTTATGTAATTTTTCTTTCTTCGTACGGCTGCTGTTGTCCTTCCTTGGTATCTTTTGGCCTGGATAATTCGCGTAATACAGCATCAAAGGCAAAGACAAGTTACTACCCTGTGCTTATTCTAATATTGAAATATTTGTTATTTTCCATTCCTTTTTCCATTTTTCATATTTTGATTAATCATATGACGCCAATTGAGACCTGGAAAGTTGATAGTGATTGCAGACTAAGTTTTGATGATGGGAAATGTTTTTGGCTGGGTTCTCTTCTCAACATCAAGCACCTGAAGAACTTGCATTTATGCTACAAGCAGACGAACAAGGTTAGCAGTTTGCAATATCACCAGGATCTATTTTTCACTGATTAA 1767 0.3984 MRVLEAAIKADQSVKKSSLDIQPFKPGYSATTTVYHPGDTSIDISDDWESSSIPLDLHNSRLLAIAAVEHQVPEIREGYANAAGTNGITLWHSVGLIQWDAPDPVIDTCNSLYCDDKNDRTVEFRNTSYRLPAWSVSILPDCKNVVFNTAKVNPQTNVVAMIPRSLQQSNIGVNSLIWVIVKEKPGIWGTTDFVKNGFVDFINTTKDTTDYLYGIPQEYQVGLQTAGPFYDFMGAGLTSVKIKGLNNGMIDLSSYAWTYKIGVQGEHLKLYQGDGLSNVNWTSTLEPPKMQPLTWYKTIVHAPPGDEPVGLDMLHMGKGLAWLNGEFVESYITTNKKIDASGNILGCFCFLQVVMPDLNRSFEEHKPIGRENISESKELAYILQEIETMTLAWSLSQAELVEGETEEGDLTPNKEGPVEGRELLEALKDIKDHLFWAYSFEKELMALLLLRNVAPLFNADVEKVLTYFYVIFLSSYGCCCPSLVSFGLDNSRNTASKAKTSYYPVLILILKYLLFSIPFSIFHILINHMTPIETWKVDSDCRLSFDDGKCFWLGSLLNIKHLKNLHLCYKQTNKVSSLQYHQDLFFTD 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01047 588 PANTHER BETA-GALACTOSIDASE RELATED 220 340 IPR001944 GO:0004553|GO:0005975
Vimu10g01047 588 Pfam Protein of unknown function (DUF3675) 26 97 IPR022143 -
Vimu10g01047 588 SUPERFAMILY Galactose-binding domain-like 257 327 IPR008979 -
Vimu10g01047 588 Pfam Beta-sandwich domain in beta galactosidase 115 152 IPR041392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01047 Vimu-Chr10 9768609 9779851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01047 108 331 Glycoside Hydrolase AT5G63810 36.395 2.87e-38 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01047 - - gmx:100815037 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01047 10 9768609 9779851 Vimu10g01047 10 9768609 9779851 ECH