Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01019 ATGGCGTCGAGTATAGGGATGATGGATAGCGCATACTTTGTCGGCAGAAATGAGATTCTCACTTGGATCAACAATCGCCTTCAACTTAACCTCACTCGCATTGAGGAGGCTGCATCTGGTGCTGTACAATGCCAGATGATGGACATGACATATCCAGGGGTTGTTCCAATGCACAAGGTGAATTTTGACGCAAAGACAGAGTATGATATGATTCAGAATTACAAAGTTCTACAGGATGTGTTCAACAAGCTGAAAATTGAGAAGGGTTTATTGCTCACTTTACTTACTTTTTGGGCTATGCAATCCCAGTTTCATTGGTTGTATAAGTTTAATGCCAGGCATATTGAAGTTGGAAGGCTTGTTAAAGGCCGACCTTTGGACAACTTGGAGTTCCTTCAATGGCTAAAACGCTATTGTGATTCTGTCAATGGAGGCATTATGAATGAGAACTATAATCCCGTTGAGAGGAGGAATAGTAAGGGTGGAAACCGGAATGTCAAGGGTCTAAAGGGATCCAAATCACTGCAAACAAATGCTATGAATCATTCTGGTTCAGGCGACTCACTCAGGTCCAAGCAATTGAGATCAAGTGGAGGAGCAGATGGTGGTAATGCTTCAGCTGATATTCAGGTTTTGTCCAAGCAGGTTTCTGATCTCACACTGTCAGTGGATCACTTGGAAAAAGAAAGAGACTTTTACTTTGCAAAACTAAGGGATATAGAAATTCTTTGTCAAGCTTCAGAACTGGAGAATGATCCTATGTCTCTGGCAATTAAAAAGATTCTGTATGCGGCTGATGCAAAGGGATCAGCATTAGATGAAGCTCAGGAATACCTTAATGAAGTCATCAATGGTATTGAAGATGAAGTTGAAGGTGAAGTTGAAGAAGAAACTGAAACCTGA 903 0.4131 MASSIGMMDSAYFVGRNEILTWINNRLQLNLTRIEEAASGAVQCQMMDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKGLLLTLLTFWAMQSQFHWLYKFNARHIEVGRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRNSKGGNRNVKGLKGSKSLQTNAMNHSGSGDSLRSKQLRSSGGADGGNASADIQVLSKQVSDLTLSVDHLEKERDFYFAKLRDIEILCQASELENDPMSLAIKKILYAADAKGSALDEAQEYLNEVINGIEDEVEGEVEEETET 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01019 300 ProSiteProfiles Calponin homology (CH) domain profile. 13 140 IPR001715 GO:0005515
Vimu10g01019 300 SUPERFAMILY Calponin-homology domain, CH-domain 5 157 IPR036872 -
Vimu10g01019 300 FunFam RP/EB family microtubule-associated protein 6 114 - -
Vimu10g01019 300 MobiDBLite consensus disorder prediction 169 200 - -
Vimu10g01019 300 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 6 291 IPR027328 GO:0008017
Vimu10g01019 300 MobiDBLite consensus disorder prediction 150 202 - -
Vimu10g01019 300 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 201 271 IPR004953 GO:0008017
Vimu10g01019 300 Pfam EB1-like C-terminal motif 226 264 IPR004953 GO:0008017
Vimu10g01019 300 FunFam Microtubule-associated protein RP/EB family member 1B 207 282 - -
Vimu10g01019 300 Gene3D - 6 160 IPR036872 -
Vimu10g01019 300 SUPERFAMILY EB1 dimerisation domain-like 209 267 IPR036133 GO:0008017
Vimu10g01019 300 Gene3D - 207 290 - -
Vimu10g01019 300 Coils Coil 209 229 - -
Vimu10g01019 300 Pfam Calponin homology (CH) domain 16 88 IPR001715 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01019 K10436 - gmx:100809691 444.891