Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01012 ATGGCAGATCCCACCCCTATCCTCTGCCAACACAATCCATCATCTGACACACAAGAACAACCACCATCACCACCACCCAACAAATACCACCCATCCCTGGGATCCACCGTCGAACTCTGCATAGGCGACTTCAACTGGTCCCAGTTCCTCCAATCAGTACTTGTCTCCATCGCCTGGCTCTTCGACGCCCAGCAGACCTTCATCACCGTCTTCACCGACGCCCAGCCCTCGTGGCACTGCACCAGCGCTGACAATGACTGCGCCGCCACCGCCACACTCTGTGACCTTCCCAGGGAGTGGTGGGCGTGGGACGGGCCTGCGCATGCATCCACCGTGTCAGAGTGGAGTCTGGAGTGCGCGAACTCCCTAATATCGGGGCTTCCCGCTTCGAGCTTCTTCGTGGGGTGCTTGGTGGGAGGATTCGGGCTGGCCTCGCTGGCTGACTCCTCGCTCGGGCGAAAGAACATGCTCTTCTTCTCCTGCCTCGTCATGGGCATCACTTCTCTTCTCGCCACTCTCTCGTCCAACGTTTGGATCTACTCCGCGCTCAAGTTCCTCTGCGGCTTCGCTCGCGCCACCATTGGCACTTCCGCGCTCGTGCTCGCCACCGAGATCGTGGGCAAACGGCGGCGCGGCCAGACCAGTGTCATCGGCTTCTTTTTCTTCACTATAGGGTTCTTGTCGCTACCAGTCATGGCTTACGCAAACAAGAGTTCTTCATGGAGGAACCTTTATCTGTGGACTTCGATTTTAACGATGATCTACTGCATATTGGTGAAGGTGTTCGTTACGGAATCCCCAAGATGGCTTCTAGTGCGAGGAAGAACAGAAGAAGCCGTGACCACGCTGAAATACATCACATCTGTCACTCAAAGCAACCTGGATTTGGCCATTAATAACATGTCCCACGAGGAAGAAAATTGGAACGTGGATTTGTTCTCGGCCCTCAGAATTCTGCTACAGAAGAAATGGTCACGTAGAAGGCTCGTCTCAATTATGGGCATGGGTATAGGCATAGGATTCGTCTATTATGGCATGCCACTAGGCCTTCAAAACCTCTCTTTCAACCTCTACTTGGGTGTCACTTTCAATGCCTTATCCGAGTTACCCTCTGCATTGATTGTCTTCTTCTTCATAGACAAATTCAACAGGAGAGTTGCACTCCTTTTCTTCACCATCCTCAGTGGTGTTTTCAGCCTGTTGTCCATCATTGAAGTCAAGCCATGGAGCAATCTCCAAATAGGGTTCGAGTTGATATCATTCTTCAGCGCCTGTTCTTCGTTTAACATCTACCTCATCTACACCACCGAACTCTTCCCAACATGTGTGAGGAACTCAGCACTGTCCATGGCAAGGTTAGCAGTGGTGTTAGGTGGCGCGTTCAGTCCAATGCTGGTGAGTGCCGGAAGAGCGAACAAGTTTCTGTGTTACGGGGTTTTTGGGTTGGTGATAGGTTTCAGTGGGGTTTATGGAATATTCTTGCCAGAGACAAGGGGAAGAGCACTCTGTGATACAATGGATGAAGAAGAAAGCAAGGAGAATATTGCTTCTGGCATCTTGGCTTAA 1566 0.5166 MADPTPILCQHNPSSDTQEQPPSPPPNKYHPSLGSTVELCIGDFNWSQFLQSVLVSIAWLFDAQQTFITVFTDAQPSWHCTSADNDCAATATLCDLPREWWAWDGPAHASTVSEWSLECANSLISGLPASSFFVGCLVGGFGLASLADSSLGRKNMLFFSCLVMGITSLLATLSSNVWIYSALKFLCGFARATIGTSALVLATEIVGKRRRGQTSVIGFFFFTIGFLSLPVMAYANKSSSWRNLYLWTSILTMIYCILVKVFVTESPRWLLVRGRTEEAVTTLKYITSVTQSNLDLAINNMSHEEENWNVDLFSALRILLQKKWSRRRLVSIMGMGIGIGFVYYGMPLGLQNLSFNLYLGVTFNALSELPSALIVFFFIDKFNRRVALLFFTILSGVFSLLSIIEVKPWSNLQIGFELISFFSACSSFNIYLIYTTELFPTCVRNSALSMARLAVVLGGAFSPMLVSAGRANKFLCYGVFGLVIGFSGVYGIFLPETRGRALCDTMDEEESKENIASGILA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01012 521 MobiDBLite consensus disorder prediction 1 29 - -
Vimu10g01012 521 Gene3D MFS general substrate transporter like domains 45 510 IPR036259 -
Vimu10g01012 521 SUPERFAMILY MFS general substrate transporter 122 502 IPR036259 -
Vimu10g01012 521 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 47 508 - -
Vimu10g01012 521 ProSiteProfiles Major facilitator superfamily (MFS) profile. 51 499 IPR020846 GO:0022857
Vimu10g01012 521 Pfam Sugar (and other) transporter 116 502 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01012 Vimu-Chr10 9345277 9347216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01012 1 512 Organic Solute Cotransporters AT1G16390 57.582 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01012 - - gmx:100812722 831.632