Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00979 ATGTTGATTCAGATTCCTCGCTTCACCAACTCTCTCAGAGACCCCTTCGATGTCGACCAGTACTATCTTCATCGCAAAACCATTCTTCATAATCAAAAACCTCGCAATTCTGCAAGTTCTCTTGATGAATCGGAACTGGCGCGGAAGATTGTTCAAGGGTGGGAAGAAGCTTCTTCTGAAGTGCGACAAGCCTACAAGCAGTTTACAGGAGCAGTGGTGGACATGGTTGACGGAGAAATGCGCTCTGAGGAGTTCCATGAGGTGGCACTGGCTGTGTTTGAATTACAAAAGCTTATTGGACACACACTTGCTGATGCCAAGTTGAGGCAAGTTGCATCACTAGCACAGAGGCTTCTAAATTTACAGCCGCTCAATAAAATGTCTGCCATTTCTATTGAAAGAAACTTAGATGCTGATGACGATTTAGAATTTGGAGCTGATTTGTTTTTTCAAGCACCTGCTCGTTTCTTGGTTGATGTATCCTTAGATGACGGAGATATGATGGATTTTGAAAGCACTGTTCCATTAGAATTTCACAATGAACAGTATGGTCATACCAGCCCAGCAGATCATTCTATTGTCGATGGAGAAAAGTTCAACTTGGCTTGGATAAGAGATGCATGTGATAAAATTGTTAGGAATTGTGATTCACAGCTATCCCAAGATGAATTGGCAATGGCCATTTGCCGGGTTCTTAATTCAGAAAAGCCTGGTGAAGAGATAGCTGGAGATCTGTTGGATCTTGTTGGTGATAGTGCATTTGAAACTGTGCAAATCTTTTTATTGCATCGAAAGGAGATTGTTGAATCTATTCATCATGGATTATTGGTATTGAAGTCTGATAAAAATGCTTCAAATGCTCAGTCTCGCATGCCTAGTTATGGAACACAGGTCACTGTTCAAACAGAGTCAGGAAAGCAAATTGACAAGCTTCGACGCAAGGAGGAAAAACGAAATAGACGGGTAATAGAACATGCTGGTGATGGTGACTTGTCTGTGCTGGATTTCTCATCTTTACTTCAAGCAAGTGAGAGGAAAAATTTGTTTGATGAGATGATTGGGTCTGGAGATAGGTCCGAGTCAATAGCTGTTACTGCTCTTCCTGAAGGAACTGTAAGGAAGCATTTTAAGGGGTACGAAGAGGTTATTATTCCCCCAAAACCAACTGCACCGTTGAAACCTGGAGAAAAGCTGATTGAGATCCGGGAGTTAGATGACTTTGCACAAGCTGCATTCCGTGGGTACAAATCACTAAACCGAATCCAGAGCAGGATATTTTCAACTGTTTATGGAACTAATGAGAATATTCTAGTGTGTGCTCCCACTGGTGCTGGCAAAACTAATATAGCTATGATTTCAATTCTACATGAGATAGGACAACACTTCAGGGATGGGTACTTGCATAAAGATGAATTTAAGATAGTTTATGTTGCGCCAATGAAGGCTTTGGCTGCTGAAGTCACCTCAACATTCAGCCAACGTTTATCTCCTTTGAATATGATTGTTAGAGAGCTTACCGGAGATATGCAGCTTTCTAAAAATGAGCTTGAAGAAACTCAGATGATAGTGACAACACCCGAGAAATGGGATGTCATTACACGCAAAAGCAGTGACATGTCACTGTCAATGCTGGTAAAGCTGTTAATTATTGATGAAGTCCATCTACTCAATGATGATCGAGGTCCTGTGATAGAGGCTCTGGTTGCTAGGACGCTCCGGCAGGTGGAATCTACACAGACAATGATACGCATTGTGGGCCTTTCTGCCACTCTTCCCAATTACCTAGAGGTTGCACAATTTCTCAGGGTAAATCCTGACACAGGCCTTTTCTTCTTTGATTCTAGTTACCGTCCAGTGCCTCTTGCACAACAATATATTGGAATTAGTGAGCCAAACTTTGCAGCTCGTAACGAATTGTTGAATGATATATGCTATAGAAAGGTTGCCGATTCTCTAAGGCAAGGCCACCAGGCAATGGTATTTGTCCACTCCCGAAAGGACACTGTCAAGACAGCTAATAAACTGGTTGAACTAGCACGGAGGAATGAGGATTTGGAACTTTTTAGTAATAATACACATCCACAATACACCTTTATGAAGAAAGAAGTCATTAAATCCAGAAACAAAGATCTTGTTGAACTTTTTGAATATGGTGTGGGTGTGCATCATGCTGGGATGCTACGTGCAGATAGAGGACTTACTGAGCGACTTTTCTCTGATGGACTTCTGAAGGTTCTTGTCTGTACAGCAACTTTGGCATGGGGTGTCAATCTACCTGCACACACAGTGGTCATTAAGAAGGAGGATGTTGTGAACCGGAAAGATGAGATGAGGGATGATTATAGTTGGATGGTGAGTACTGAAGAGGGTACCCAACTATATGATCCAAAAGCGGGGGGTTGGCGAGACCTTGGTATGCTTGATGTTATGCAGATATTTGGGCGAGCTGGGAGACCTCAGTTTGACAAAAGTGGTGAAGGTATTATAATCACGTCACATGACAAATTAGCTTATTATCTGCGACTGTTGACAAGCCAACTCCCGATTGAAAGCCAGTTCATTAGCTCCTTGAAAGATAATTTAAATGCAGAGGTGGCATTGGGTACTGTAACTAATGTTAAGGAAGCCTGTGCTTGGCTGGGCTATACTTATCTTTTTATAAGGATGAAGATGAATCCTTTAGCCTATGGTATTGGGTGGGACGAGGTGATGGCAGATCCTGCTCTTAGTTCTAAGCAGAGGTCTCTTGTAATTGATGCTGCACGTGCCCTTGATAAAGCAAAAATGATGCGTTTTGATGAGAAAAGTGGCAATTTTTATTGTACTGAGCTTGGTCGCATTGCAAGTCATTTTTACATTCAATATTCCAGTGTTGAAACATACAATGAAATGCTGAGACGGCACATGAATGACAGTGAGGTGATTAACATGATTGCACATTCTTCTGAATTTGAAAATATTGCTGTTCGAGAAGAAGAACAAAATGAGCTAGAGATGTTGGCACGCACATCATGTCCATTGGAAATTAAGGGTGGTCCTTCCAATAAACATGGAAAAATTTCCATCTTGATTCAGTTGTACATATCTCGAGGTTCTATGGATTCTTTTTCTTTGGTATCTGATGCTGCATATATTAGTGCAAGCTTGGCTCGAATAACACGGGCGTTATTTGAGATTTGTTTACGAAGAGGCTGGTGTGAAATGACTCTGTTCATGCTGGAATATAGCAAAGCTGTGGATCGTCAAGTTTGGCCACATCAACATCCTCTTAGACAATTTGACAAGGATCTTTCTGCAGAAATATTGAGAAAGCTTGAAGAGCGTGGAGCTGACCTAGATCGCCTATTTGAGATGGAGGAAAAAGACATTGGGGCATTAATTCGGTATGCACCAGGAGGAAGGTTGGTCAAGCAAAACCTAGGGTATTTTCCATCACTTCAGTTATCAGCAACTGTGAGTCCAATTACCAGAACTGTGCTGAAGGTTGATTTGGTCATTACGCCTATTTTCACTTGGAAAGATCGTTTTCACGGTACTGCTCAACGTTGGTGGATTTTGGTAGAGGATTCTGAGAATGATCACATCTATCACTCGGAACTACTTACGCTGACAAAGCGGATGGCTAGGGGCGAACCTTACAAGCTTTCCTTCACTGTACCTATATTTGAACCACATCCACCGCAATATTATATCCATGCTGTTTCTGATTCATGGCTTCATGCCGAGTCATTCTACACTATTACTTTTCACAATTTACCATTGCCAGAGGCTCGTACATCTCATACAGAACTCCTTGATTTAAAACCGCTTCCTGTGTCTTCTCTCGGCAACAATGCTTATGAAGGATTGTATAAATTTTCACATTTTAATCCAATACAAACACAGAGTTTTCATACCTTGTATCACACGGACAATAATGTTCTGTTAGGAGCTCCAACTGGAAGTGGAAAAACTATATCTGCCGAGCTTGCTATGCTCCGTCTTTTCAATACACAGCCTGATATGAAGGTTATTTATATAGCTCCTTTGAAAGCAATAGTCAGGGAGAGAATGAGTGATTGGCAAAAGCGTCTTGTCTCTCAACTAAGGAAAAAAATGGTTGAAATGACTGGAGACTATACTCCTGATTTGATGGCTCTTTTGTCAGCCGATATCATCATATCTACTCCTGAAAAATGGGATGGAATTAGTCAGCCTCATCTTCAGGTGGAGAATGTAAGAGATGAAGTTGGGTCTTTTGGGCTGCTGAATAGGGCATTTGTACCTGTAACTGAGAAAATAACAGAACCTGCAATTAAACCTCTTGAACTGGAAGCAAGATCTGCACTTGAACCTGCTGAACTAGCAGCAGGACCTGCACCTAAACCTGTATCTAATGAGAGTGGGAAATTTAGGAAAAACCTCTTACCTTGTGGAGCACAAGTATTACAGTTTGCTTCTGAAACTGTCTGCACTACTCCACGTGCTGAAGTTTCTTTCCTACCATCTTTACCTTTCACCGCTGTTGGACTTATGATTTTGGATGAGATTCACTTATTGGGAGCAGATCGTGGGCCAATCCTTGAGGTTATTGTATCTAGGATGAGGTATATATCATCCCAAACAGAGCGACCAGTAAGATTTATTGGCCTTTCTACAGCACTGGCTAATGCTGGTGATCTAGCTGACTGGTTAGGCGTTGAGGAAATTGGACTCTTTAATTTCAAGCCAAGTGTGAGGCCTGTACCTTTGGAAGTTCATATTCAAGGTTATCCTGGGAAGTATTATTGCCCAAGGATGAACAGCATGAATAAACCAGCATATGCTGCAATATGCACACATTCACCTGCAAAACCAGTTCTTATATTTGTCTCATCCCGACGCCAAACGAGACTTACTGCACTTGACCTAATTCAGTTTGCCGCGTCGGATGAACAATCAAGACAGTTTCTTAATTTGCCTGAGGAAACCCTGCAGATGGTTCTGTCTCAAGTCTCTGACCAAAACCTTAGGCATACTTTGCAATTTGGCATTGGATTGCATCATGCTGGCCTGAATGACAAAGACAGATCACTGGTTGAGGAACTCTTTGGAAACAACAAAATTCAGATATTAGTTTGTACCAGCACATTGGCTTGGGGTGTGAATCTTCCAGCTCATCTTGTGATTATCAAGTGTTATCGAAAATCCATTATGGCAGAACCATGGTGGAAATCGGTGCCAGTGGTGATGGGGGTTTGCATGGTGGCCCATCAAGGCCGCTTTTTTGCATCACGATTTACTGGCGTGGAACTTGGATGGCAAAAAAGTGGGACAAAACATTTGAATCTCTCTTGGTGTTTATCTTCAACATTTTATTTCAACAATACTTTGCATCTTTTGCAGGGAACTGAGTACTATGATGGAAAAGCAAAGAGGTATGTTGATTTTCCAATCACTGATATTTTGCAAATGATGGGTCGTGCTGGGCGCCCTCAGTTTGATCAACATGGGAAAGCTGTGATTCTTGTTCATGAACCCAAAAAGAGCTTCTATAAAAAGTTTTTGTATGAACCCTTTCCTGTTGAGAGTAGTTTGAGGGAGCATTTGCACAATCACATCAACGCTGAAATTATTTCTGGAACCATTTGTCATAAACAAGATGCAGTGCATTATCTTACGTGGACTTATTTATTTCGTAGACTGGTAAGCAGGGCTGATCAATACTTCTTCAACAAGTGCGACTATGTGACGACAATGGCGAGCGATTGTGACCCGGGTAACGACAAGCGATTGCAACGGCGACATGAGAGCAAGGGTAACGTGCAAGCGAGGCCGAGTGAGGGTGATGGTGAGTGCAAGGAAGATGAAGTGGCATTATTGAGATTGGTTCAGAAGAAGCGAGGCAACAAGAGCATAACCATGAGAGATGCCATTATGAGAGGTGTCGTCGTGAGAGTTGTTGCAACAGGAGTAGTTGCTGGAAGAGGTGCCACCATGACTGACATCTCTACCTATAGATGTTACTATTCAAGCTATGATTTGGGGCGATTTGGAGGGATT 6021 0.4202 MLIQIPRFTNSLRDPFDVDQYYLHRKTILHNQKPRNSASSLDESELARKIVQGWEEASSEVRQAYKQFTGAVVDMVDGEMRSEEFHEVALAVFELQKLIGHTLADAKLRQVASLAQRLLNLQPLNKMSAISIERNLDADDDLEFGADLFFQAPARFLVDVSLDDGDMMDFESTVPLEFHNEQYGHTSPADHSIVDGEKFNLAWIRDACDKIVRNCDSQLSQDELAMAICRVLNSEKPGEEIAGDLLDLVGDSAFETVQIFLLHRKEIVESIHHGLLVLKSDKNASNAQSRMPSYGTQVTVQTESGKQIDKLRRKEEKRNRRVIEHAGDGDLSVLDFSSLLQASERKNLFDEMIGSGDRSESIAVTALPEGTVRKHFKGYEEVIIPPKPTAPLKPGEKLIEIRELDDFAQAAFRGYKSLNRIQSRIFSTVYGTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKIVYVAPMKALAAEVTSTFSQRLSPLNMIVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISEPNFAARNELLNDICYRKVADSLRQGHQAMVFVHSRKDTVKTANKLVELARRNEDLELFSNNTHPQYTFMKKEVIKSRNKDLVELFEYGVGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKKEDVVNRKDEMRDDYSWMVSTEEGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGWDEVMADPALSSKQRSLVIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVINMIAHSSEFENIAVREEEQNELEMLARTSCPLEIKGGPSNKHGKISILIQLYISRGSMDSFSLVSDAAYISASLARITRALFEICLRRGWCEMTLFMLEYSKAVDRQVWPHQHPLRQFDKDLSAEILRKLEERGADLDRLFEMEEKDIGALIRYAPGGRLVKQNLGYFPSLQLSATVSPITRTVLKVDLVITPIFTWKDRFHGTAQRWWILVEDSENDHIYHSELLTLTKRMARGEPYKLSFTVPIFEPHPPQYYIHAVSDSWLHAESFYTITFHNLPLPEARTSHTELLDLKPLPVSSLGNNAYEGLYKFSHFNPIQTQSFHTLYHTDNNVLLGAPTGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWQKRLVSQLRKKMVEMTGDYTPDLMALLSADIIISTPEKWDGISQPHLQVENVRDEVGSFGLLNRAFVPVTEKITEPAIKPLELEARSALEPAELAAGPAPKPVSNESGKFRKNLLPCGAQVLQFASETVCTTPRAEVSFLPSLPFTAVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERPVRFIGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEQSRQFLNLPEETLQMVLSQVSDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFGNNKIQILVCTSTLAWGVNLPAHLVIIKCYRKSIMAEPWWKSVPVVMGVCMVAHQGRFFASRFTGVELGWQKSGTKHLNLSWCLSSTFYFNNTLHLLQGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREHLHNHINAEIISGTICHKQDAVHYLTWTYLFRRLVSRADQYFFNKCDYVTTMASDCDPGNDKRLQRRHESKGNVQARPSEGDGECKEDEVALLRLVQKKRGNKSITMRDAIMRGVVVRVVATGVVAGRGATMTDISTYRCYYSSYDLGRFGGI 2007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00979 2007 Pfam Sec63 Brl domain 941 1247 IPR004179 -
Vimu10g00979 2007 Gene3D - 851 940 IPR036388 -
Vimu10g00979 2007 Gene3D C2 domain 1143 1252 IPR035892 -
Vimu10g00979 2007 CDD SF2_C_Ski2 1573 1831 - -
Vimu10g00979 2007 SUPERFAMILY "Winged helix" DNA-binding domain 848 953 IPR036390 -
Vimu10g00979 2007 SMART Sec63_2 941 1249 IPR004179 -
Vimu10g00979 2007 SUPERFAMILY Sec63 N-terminal domain-like 969 1144 - -
Vimu10g00979 2007 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 427 609 IPR014001 -
Vimu10g00979 2007 PANTHER DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED 1788 1893 - -
Vimu10g00979 2007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1305 1883 IPR027417 -
Vimu10g00979 2007 SMART helicmild6 705 820 IPR001650 -
Vimu10g00979 2007 SMART helicmild6 1661 1819 IPR001650 -
Vimu10g00979 2007 SMART ultradead3 414 625 IPR014001 -
Vimu10g00979 2007 SMART ultradead3 1285 1582 IPR014001 -
Vimu10g00979 2007 SMART AAA_5 432 613 IPR003593 GO:0016887
Vimu10g00979 2007 SMART AAA_5 1303 1567 IPR003593 GO:0016887
Vimu10g00979 2007 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1298 1566 IPR014001 -
Vimu10g00979 2007 CDD DEXHc_ASCC3_1 417 613 - -
Vimu10g00979 2007 Pfam DEAD/DEAH box helicase 420 593 IPR011545 GO:0003676|GO:0005524
Vimu10g00979 2007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1175 1403 IPR027417 -
Vimu10g00979 2007 Gene3D - 1574 1848 IPR027417 -
Vimu10g00979 2007 Gene3D - 1478 1573 IPR027417 -
Vimu10g00979 2007 Gene3D - 1254 1413 IPR027417 -
Vimu10g00979 2007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 602 IPR027417 -
Vimu10g00979 2007 Gene3D - 1086 1140 - -
Vimu10g00979 2007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 848 IPR027417 -
Vimu10g00979 2007 Gene3D - 618 850 IPR027417 -
Vimu10g00979 2007 FunFam RNA helicase, activating signal cointegrator 1 406 617 - -
Vimu10g00979 2007 FunFam U5 small nuclear ribonucleoprotein helicase 1085 1141 - -
Vimu10g00979 2007 FunFam RNA helicase, activating signal cointegrator 1 1143 1252 - -
Vimu10g00979 2007 FunFam U5 small nuclear ribonucleoprotein helicase 942 1084 - -
Vimu10g00979 2007 MobiDBLite consensus disorder prediction 1913 1937 - -
Vimu10g00979 2007 Pfam DEAD/DEAH box helicase 1291 1407 IPR011545 GO:0003676|GO:0005524
Vimu10g00979 2007 Gene3D - 393 617 IPR027417 -
Vimu10g00979 2007 FunFam U5 small nuclear ribonucleoprotein helicase 850 941 - -
Vimu10g00979 2007 PIRSF BRR2 163 1409 - -
Vimu10g00979 2007 PIRSF BRR2 1497 1674 - -
Vimu10g00979 2007 PIRSF BRR2 1757 1901 - -
Vimu10g00979 2007 PIRSF BRR2 1666 1721 - -
Vimu10g00979 2007 Gene3D - 1849 1923 IPR036388 -
Vimu10g00979 2007 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 639 865 IPR001650 -
Vimu10g00979 2007 Gene3D - 942 1084 - -
Vimu10g00979 2007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1501 1713 IPR027417 -
Vimu10g00979 2007 Pfam Helicase conserved C-terminal domain 1637 1817 IPR001650 -
Vimu10g00979 2007 CDD SF2_C_Ski2 617 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00979 Vimu-Chr10 8870821 8909957 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00979 K18663 - gmx:100811503 2560.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00979 10 8870821 8909957 Vimu10g00979 10 8870821 8909957 ECH