Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00970 ATGAATCCCGAGAAGTTTACGCACAAGACTAATGAGGCTCTCGTGAGTGCTCACGAGACAGCTGTGAGCAGTGGCCACGCGCAGTTCACTCCTCTCCATCTCGCGTCCTCTCTACTCTCCGATAAGAGAGGAATTTTCTCCCAAGCGCTATCAAACGCGGCGGGAGAGGAATCGGCGCGTGCCGCGGAGAGAGTCTTCAGCCAGGCGCTGAAGAAGTTGCCCTCACAATCTCCTCCTCCGGATGAGGTTCCGGCGAGCACGAGCCTCATCAAAGTCATCCGCAGAGCGCAGTCACTCCAGAAGACGCGTGGCGACACGCACTTGGCCGTCGACCAGCTCATCTTAGGCCTTTTGGAAGATTCTCAGATCACAGAGTTGCTCAGGGAAGCCGGTGTGGCGGCACCGAAGGTGAAATCAGAAGTCGAGAAGCTTCGCGGCAAGGAAGGAAGGAAAGTGGAAAGCGCCACGGGTGACACAACCTTTCAGGCTTTGAATACCTATGGAAGGGATCTTGTACAACAAGCAGGCAAACTCGACCCGGTTATTGGAAGAGATGAGGAGATAAGAAGGGTTGTAAGGATTTTATCTAGAAGGACGAAAAATAACCCGGTTTTGATTGGTGAACCGGGTGTGGGAAAAACGGCTGTGGTTGAAGGGTTGGCTCAGAGGATTGTTAAAGGAGATGTTCCTAGTAATCTTGCTGATGTTAGGCTCATTGCATTGGACATGGGTGCGTTGGTTGCGGGCACGAAGTATAGAGGAGAGTTTGAGGAGCGGTTGAAGACAGTTTTGAAAGAGGTGGAAGAGGCTGAGGGGAAAGTTATTCTGTTTATTGATGAGATTCATTTGGTTCTTGGTGCTGGAAAAGCTGAGGGTTCCATGGATGCTGCAAATTTGTTTAAGCCTATGCTTGCACGAGGTCAATTGAGGTGCATTGGTGCCACCACGCTTGAGGAGTATAGGAAGTATGTAGAAAAGGATGCAGCTTTTGAAAGAAGGTTTCAACAGGTGTATGTGGCGGAACCAAGTGTTGTTGATACAGTAAGTATACTTCGTGGTTTGAAAGAAAAATATGAAGGTCACCATGGTGTAAGGATTCTTGATCGTGCTTTGGTTGTTGCTGCTCAACTGTCTAGTCGCTACATCACTGGTCGTCATCTTCCCGACAAGGCAATTGATTTAGTTGATGAGGCTTGTGCGAATGTAAGAGTCCAACTTGATAGCCAGCCAGAGGAAATTGACAACCTTGAAAGGAAGAGAATGCAGTTAGAAGTGGAACTTCATGCTCTGGAGAAAGAGAAAGACAAAGCTAGCAAAGCTCGTTTAGTAGAAGTGCGGAAAGAGCTTGATGACCTGAGAGATAAGCTGCAACCTTTGATGATGAAGTACAGAAAGGAAAAGGAGAGGATAGATGAGATTAGAAGACTAAAGCAAAAAAGGGAAGAGCTGAACTTTGCTCTTCTAGAGGCTGAGAGACGATATGATCTTGCCAGAGCTGCAGATTTGAGGTATGGTGCGATTCAGGAGGTGGAATCTGCAATTCAAGAGCTTGAAGGGAACACTGATGAGAATGTAATGTTGACAGAAACGGTTGGACCTGAACACATTGCTGAGGTTGTTAGTCGTTGGACTGGCATACCAGTAACAAGACTCGGGCAAAACGATAAAGAAAGGTTGATTGGTCTTGCTGACAGATTGCACGAGAGAGTTGTAGGGCAAGACCAAGCCGTTAATTCTGTAGCAGAGGCTGTGCTGAGATCAAGAGCTGGGCTTGGGAGACCTCAACAACCAACAGGGTCCTTCCTGTTCTTGGGTCCAACTGGTGTTGGCAAGACCGAGCTTGCAAAGGCCCTCGCTGAACAACTTTTTGACAATGAAAATCAATTGGTTAGAATTGACATGTCTGAATACATGGAGCAACATTCTGTTTCACGCTTGATTGGTGCACCACCTGGGTATGTTGGACACGAAGAAGGTGGTCAACTAACGGAAGCAGTAAGGCGAAGACCTTATAGTGTGGTATTATTTGATGAAGTAGAAAAGGCACACATATCTGTGTTTAACACTCTTCTTCAAGTCTTGGATGATGGAAGGTTAACTGATGGTCAAGGCCGCACTGTGGACTTTAGAAACACAGTAATTATCATGACCTCTAACCTTGGGGCAGAGCACCTCCTTACTGGACTTTCAGGAAAATCTTCAATGCAAGCGGCTCGTGATAAAGTAATGCAGGAGGTAAAAAGACATTTTAGGCCAGAACTGTTGAACAGACTTGATGAAATTGTTGTATTTGATCCTCTTTCGCACGACCAACTAAGGAAGGTTGCAAGGTTACAAATGAAGGACGTTGCCTCCCGTCTTGCTGAGAGAGGAGTTGCAATGGCAGTTACTGATGCAGCTCTTGACTACATCCTTAGTGAAAGTTATGATCCGGTTTATGGTGCCAGACCAATTAGGAGGTGGCTTGAGAAAAAGGTTGTGACGGAGCTTTCTAGAATGCTTGTGAAGGAAGAAATTGATGAGAACTCAACAGTTTACATTGATGCTGGTCCTGTGGGTAGCGAGCTAATCTATCGGGTAGAAAAGAATGGAGGGTTGGTTAATGCTGTAACTGGTCAGAAGTCTGATATTTTGATTCAGATGCCTAATGGAGCAGTTTCAAGATCTGATGCTGCCCAGGCAGTGAAGAAGTTAAAGATTGAGCAAATGGATGAAGATGAAGATGGCGAAATGGAGATGTGA 2742 0.4639 MNPEKFTHKTNEALVSAHETAVSSGHAQFTPLHLASSLLSDKRGIFSQALSNAAGEESARAAERVFSQALKKLPSQSPPPDEVPASTSLIKVIRRAQSLQKTRGDTHLAVDQLILGLLEDSQITELLREAGVAAPKVKSEVEKLRGKEGRKVESATGDTTFQALNTYGRDLVQQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPSNLADVRLIALDMGALVAGTKYRGEFEERLKTVLKEVEEAEGKVILFIDEIHLVLGAGKAEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVVDTVSILRGLKEKYEGHHGVRILDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMKYRKEKERIDEIRRLKQKREELNFALLEAERRYDLARAADLRYGAIQEVESAIQELEGNTDENVMLTETVGPEHIAEVVSRWTGIPVTRLGQNDKERLIGLADRLHERVVGQDQAVNSVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDNENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLTGLSGKSSMQAARDKVMQEVKRHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVASRLAERGVAMAVTDAALDYILSESYDPVYGARPIRRWLEKKVVTELSRMLVKEEIDENSTVYIDAGPVGSELIYRVEKNGGLVNAVTGQKSDILIQMPNGAVSRSDAAQAVKKLKIEQMDEDEDGEMEM 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00970 913 ProSitePatterns Chaperonins clpA/B signature 2. 631 649 IPR028299 -
Vimu10g00970 913 Gene3D - 344 544 IPR027417 -
Vimu10g00970 913 Gene3D - 767 861 - -
Vimu10g00970 913 Coils Coil 463 493 - -
Vimu10g00970 913 CDD RecA-like_ClpB_Hsp104-like 558 764 - -
Vimu10g00970 913 SUPERFAMILY Double Clp-N motif 4 157 IPR036628 -
Vimu10g00970 913 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 675 693 IPR001270 GO:0005524
Vimu10g00970 913 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 708 722 IPR001270 GO:0005524
Vimu10g00970 913 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 601 619 IPR001270 GO:0005524
Vimu10g00970 913 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 646 664 IPR001270 GO:0005524
Vimu10g00970 913 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Vimu10g00970 913 Pfam ATPase family associated with various cellular activities (AAA) 204 317 IPR003959 GO:0005524|GO:0016887
Vimu10g00970 913 PANTHER ATP-DEPENDENT CLP PROTEASE 7 863 - -
Vimu10g00970 913 FunFam ATP-dependent chaperone ClpB 344 544 - -
Vimu10g00970 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 848 IPR027417 -
Vimu10g00970 913 Coils Coil 253 273 - -
Vimu10g00970 913 FunFam Chaperone clpB 1, putative 152 343 - -
Vimu10g00970 913 Coils Coil 406 455 - -
Vimu10g00970 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 545 IPR027417 -
Vimu10g00970 913 FunFam ATP-dependent Clp protease subunit 550 765 - -
Vimu10g00970 913 Pfam C-terminal, D2-small domain, of ClpB protein 767 847 IPR019489 -
Vimu10g00970 913 SMART ClpB_D2_small_2 767 858 IPR019489 -
Vimu10g00970 913 Pfam AAA domain (Cdc48 subfamily) 597 761 IPR003959 GO:0005524|GO:0016887
Vimu10g00970 913 Gene3D - 550 766 IPR027417 -
Vimu10g00970 913 Pfam Clp amino terminal domain, pathogenicity island component 17 57 IPR004176 -
Vimu10g00970 913 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Vimu10g00970 913 Gene3D - 150 343 IPR027417 -
Vimu10g00970 913 Gene3D - 3 148 IPR036628 -
Vimu10g00970 913 SMART AAA_5 199 344 IPR003593 GO:0016887
Vimu10g00970 913 SMART AAA_5 597 749 IPR003593 GO:0016887
Vimu10g00970 913 CDD AAA 182 337 - -
Vimu10g00970 913 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524
Vimu10g00970 913 Pfam AAA lid domain 344 443 IPR041546 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00970 Vimu-Chr10 8729930 8733661 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00970 K03695 - qsa:O6P43_002209 1575.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00970 10 8729930 8733661 Vimu10g00970 10 8729930 8733661 ECH