Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00945 ATGACATTGGCATATTCATTTTCCACTCCTCAGGTTCACGCATACCACAATCCAACCAGAAGAAGTCACTTTCAGATAAAACGCAAGCCTAACCGAACGCACCACTTTCTCTTAATACCAACTTCTTCACCTTCCTCCTTCCTCTTCTCTTGTTCATCCTTCCCTCTCACATATTCAGATTCAACCCTACAATTTCGCCACAACCACCTTCTCTCCACCGATGGCAATTTTGTGGTCGAAGACCTTGGTGCGGCGGTGGAGGAGGAAGCGAGCTCAACGGCGGCGAGGGTTTTCGTCCAGGAGCCGCCGTGGCTCTTCCTCAAGGGGTTGCTAATGCAGGAGGAAGAGATGAGGCGGAAGGAGGAAGAGATGAGGCAGAAGGAGAAAGAGAGGGAAAAGTACAATTGCCTGCGGCGGAGGCAGATTGAGGCGGAGACTGAGGCGTGGCAGAAGATGGTGGAGGAGTACAGGGAATTGGAGAAGGAGATGCGCCAGAAGATGTTGGCGCCCAATTTGCCGCACGTTAAGGCGCTTCTATTGGGCTGGTTTGAGCCTTTCAGGACCGTAGTGGAGGCTGAGCAGAAAGCTCACCGCGCGCGTTCCAAGAAGCAGCAGGAATCTATTGCACCCCATGTCGATGACTTGCCGTCCGATAAGGTGGCGGTCATTGTGATGCATAAGATGATGGCCATGGTAATGGAGAATGAGGAAGGCTGCGTTCAGCTTGTTCATGCGGCTGTTCATATTGGCATGGCGGTAGAACAGGAGGTTAGGATTCATAAGTTCATTGAAAGAAGAAAAACTAGCCGGAGTAACAAGGTAGAGGCTGATGACGAAGACAGTTTGGATAGTAATAAAGAAAAGCAAAGGAATCATTTGAACAGTTTGATTAAAAAAAATAGACTGAAAGAAGTGCAGATGATATTGAAAAAAGAAGAATGCAGTCCTTGGAGCCGGGACACGCAGGCCAAGCTGGGAAGTCGATTAATAGAATTGTTAGTTGATACAGCATATGTACACTCTCCGGTTAACCAGTTTGGTGATACTCCGCCTGATATCCGACCGGCTTTCAGGCACTGTTTTAAAGCCGCACCGTGGCATCCAGGGCAAAAGTTTTCAAAGAAGTATGGTGTTATACAATGTGATCCCTTAGTCCTAGTTGGGCTTGAACAATGTGCTAAGCATATGTTCATACCTTACATGCCTATGTTAGTACCTCCCAAAAAATGGAAAGGATATGACAAGGGCGGACACTTTTTCTTACCATCTTATATTATGCGTACTCATGGATCTAGAAAGCAACAAGATGTAATGAAGAGTGTAAATGCAGCGCAAATGCAAAAGGTTTTTGAGGCCTTGGATATTCTTGGAAACACCAAATGGCGAGTAAATAAAAGAGTGCTTGGAGTTGTTGAGTCAATTTGGGCAGGAGGAGGTAACATTGCAGGACTGGTTAATTGCAAAGACGTTCCTTTACCAGATAAGCCACCTGTAGAGGATTTAAAGCTAATTCAGGAGTGGAAATGTGGTCTAAGGAAGGCGAAAAAAATTAATATGGAAAGGCATTCTCTAAGATGTGACACTGAACTTAAGCTTTCTGTGGCAAGAAAAATGAAGGACGAGGAATGCTTTTATTATCCGCACAATCTTGACTTCCGTGGCAGAGCATATCCTATGCATCCTCACTTGAATCATTTAGGTTCTGATCTGTGTCGAGGACTACTTGAATTTGCAGAAGGGAAGCCACTGGGAAAGGGTGGACTAAAGTGGCTGAAGATACATCTAGCAAATTTGTATGCTGGTGGTATTGAGAAGCTATCTTATGATGGGCGGTTAGCATTTATAGAGAATCATATTAATGATATAATTGATTCTGCTGATAACCCTGTTAATGGAAATCGTTGGTGGTTAACTGCGGAGGATCCTTTTCAGTGCCTTACTGCTTGTATTAATCTATCAGAGGCATTAAAAAGCTCTTCACCAAATTCTTTTATCTCACATATTCCAATTCATCAGGATGGTTCCTGTAATGGCTTACAACACTATGCAGCACTAGGAAGAAATGAGCCGGAGGCTGCAGCTGTTAACTTAGTAGCTAAGGAGAAACCTGCTGATGTATACACAGAGATTGCTGTTAGGGTTTATGATATAATGAGACGAGACAGCAGCAAGGACCCAGATACCTTTCCAAATGCTTTGTTAGCAAAGGTGTTGATTGATCAGATTGATAGGAAACTGGTCAAACAGACGGTAATGACTTCTGTTTATGGTGTTACTTTTATTGGGGCGCGGGAACAAATTAAGAGAAGATTAGAGGAGAAAGGTCTCATTGATGATGATAGACTTTTATATGCTGCAGCTTGCTATGCAGCTAAGGTGACATTGGCTGCCCTTGGAGAAGTTTTTGAGGCTGCACGTGGCATCATGAATTGGCTTGGGGATTGTGCAAAGGTAGCTCCTTTTGTCACTGTATGTTGGATTCCAAATGATGCTATTAGTCCCACAGTGATTGCTAGTGAAAATCAGGCTGTTTACTGGACCACTCCTCTAGGTCTTCCTGTTGTACAACCATACTGTAAAAGTGAACGTTATCAGATAAGAACATCTCTTCAGCTTTTGGCTTTGCAGAGGGAGGGGAGTGCTGTATCTGTCAAGAAGCAGAGAAGTGCATTTCCTCCTAACTTCGTACATTCATTGGATAGTTCACACATGATGATGACTGCTCTGGCCTGCAATGATGCTGGATTATGTTTTGCAGGGGTTCATGATTCATTTTGGACGCACCCTTGCGACGTTGAGAAAATGAATCAAATTCTGAGACAAAAATTTGTGGAACTTTATAACATGCCCATACTTGAAAATTTGCTCGAGGGCTTCGAGACTACATATCCAGGATTGGCTTTCCCCTCATTGCCAAAGAGAGGTGAGTTTGACTTAGAGAAGGTTCTTGATTCTCCGTACTTCTTCAACTGA 2973 0.4403 MTLAYSFSTPQVHAYHNPTRRSHFQIKRKPNRTHHFLLIPTSSPSSFLFSCSSFPLTYSDSTLQFRHNHLLSTDGNFVVEDLGAAVEEEASSTAARVFVQEPPWLFLKGLLMQEEEMRRKEEEMRQKEKEREKYNCLRRRQIEAETEAWQKMVEEYRELEKEMRQKMLAPNLPHVKALLLGWFEPFRTVVEAEQKAHRARSKKQQESIAPHVDDLPSDKVAVIVMHKMMAMVMENEEGCVQLVHAAVHIGMAVEQEVRIHKFIERRKTSRSNKVEADDEDSLDSNKEKQRNHLNSLIKKNRLKEVQMILKKEECSPWSRDTQAKLGSRLIELLVDTAYVHSPVNQFGDTPPDIRPAFRHCFKAAPWHPGQKFSKKYGVIQCDPLVLVGLEQCAKHMFIPYMPMLVPPKKWKGYDKGGHFFLPSYIMRTHGSRKQQDVMKSVNAAQMQKVFEALDILGNTKWRVNKRVLGVVESIWAGGGNIAGLVNCKDVPLPDKPPVEDLKLIQEWKCGLRKAKKINMERHSLRCDTELKLSVARKMKDEECFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGLLEFAEGKPLGKGGLKWLKIHLANLYAGGIEKLSYDGRLAFIENHINDIIDSADNPVNGNRWWLTAEDPFQCLTACINLSEALKSSSPNSFISHIPIHQDGSCNGLQHYAALGRNEPEAAAVNLVAKEKPADVYTEIAVRVYDIMRRDSSKDPDTFPNALLAKVLIDQIDRKLVKQTVMTSVYGVTFIGAREQIKRRLEEKGLIDDDRLLYAAACYAAKVTLAALGEVFEAARGIMNWLGDCAKVAPFVTVCWIPNDAISPTVIASENQAVYWTTPLGLPVVQPYCKSERYQIRTSLQLLALQREGSAVSVKKQRSAFPPNFVHSLDSSHMMMTALACNDAGLCFAGVHDSFWTHPCDVEKMNQILRQKFVELYNMPILENLLEGFETTYPGLAFPSLPKRGEFDLEKVLDSPYFFN 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00945 990 Gene3D - 581 659 - -
Vimu10g00945 990 Gene3D - 113 458 IPR037159 -
Vimu10g00945 990 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 114 990 IPR002092 GO:0003677|GO:0003899|GO:0006351
Vimu10g00945 990 SUPERFAMILY DNA/RNA polymerases 127 990 IPR043502 -
Vimu10g00945 990 Gene3D - 459 541 IPR024075 GO:0003899
Vimu10g00945 990 FunFam DNA-directed RNA polymerase 691 897 - -
Vimu10g00945 990 Pfam DNA-directed RNA polymerase N-terminal 140 458 IPR029262 -
Vimu10g00945 990 SMART RPOL_N_2 139 458 IPR029262 -
Vimu10g00945 990 FunFam DNA-directed RNA polymerase 120 457 - -
Vimu10g00945 990 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 669 680 IPR002092 GO:0003677|GO:0003899|GO:0006351
Vimu10g00945 990 FunFam DNA-directed RNA polymerase 581 659 - -
Vimu10g00945 990 Coils Coil 107 162 - -
Vimu10g00945 990 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 742 756 IPR002092 GO:0003677|GO:0003899|GO:0006351
Vimu10g00945 990 FunFam DNA-directed RNA polymerase 459 541 - -
Vimu10g00945 990 Gene3D - 691 897 - -
Vimu10g00945 990 MobiDBLite consensus disorder prediction 268 290 - -
Vimu10g00945 990 Pfam DNA-dependent RNA polymerase 581 990 IPR046950 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00945 Vimu-Chr10 8458204 8490143 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00945 K10908 - gmx:100802776 1711.81