Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu10g00944 | ATGTTAGAGCAGTTACTGATATTTACAAGAGGAGGGTTAATCCTCTGGACATGTAAAGAACTTGGGAATGCTCTGAAAGGTTCCCCTATAGATACCTTGATTCGTTCATGTCTTTTGGAGGAGCGATCCGGTGCGGCATCATACAATTATGATGCTCCTGGTGCTTCCTACACCCTCAAGTGGACCTTCCACAATGAACTTGGCCTTGTGTTTGTGGCTGTGTACCAACGGATTCTTCATCTCTTGTATGTGGAAGATCTGCTTACTATGGTGAAGCGTGAGTTTTCGCAGATCTATGATCCCAAAAGGACTGCCTACCCTGATTTTGATGAGACCTTTAGGCAGCTAAAGATGGAGGCTTTGGCCCGTGCCGAAGATTTGAAGCGGTCGAGTCCAAATCCTGTTGCTGGGAATGCTAAGAAGCAGGTGCAGGGGAACAATAAATCGGAATTCGAGGGAGGGAATAAGAAGAAGAGTGGTGTTGTGGCGAAGGATAGTGGTGGGAAAGATGGTGACGGTGGCAATGGACGGAGGTCTGAGAATGGACACTCCAATGGAAATTTTGTTGTTGCTAAAGATACTAACCTGAGTAGTGATGTGAATGGTAGACAGAATGGAAGTCCCAATGCTGGGGCTTTTGATGTACATAAGCTTCAGAAGCTTAGGACCAAAGGTGGGAAGAAGGTAGATACTACTGCAAAGGCTTCCAAGGCAGAGCCAAACAAAAAAGTCATAAAGAAAAATAGGGTGTGGGATGATGCTGTTACTACGGAAACTAAATTGGACTTTACAGATCATTCTGCAGAGGACGGGGACAGGAACATAGATTTTGTGGTTGCAGATCAAGGTGAAAGTATGATGGATAAAGAAGAGATAGTTAGTTCTGAAAGTGAGGAGGAAGAAGAGGAGGAGAATGTCGGAAACAAGAGAAAGCCTGATGCCAAAAACAAGGGTTGGTTTTCGTCCATGTTCCAGAGTATTGCAGGGAAGGCAAATTTGGAGAAGTCAGACTTAGAACCAGCTTTGAAAGCTCTAAAGGATAGGCTCATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGTTGCAGCAAGTCTTGAAGGCAAAAAGCTGGCTTCATTTACAAGGATATCTTCAACAGTGCATGTTGCGGCAATGGAAGAAGCTCTTATTCGAATTTTAACTCCTAGACGTTCTATTGATATACTGAGGGATGTGCATGCTGCCAAAGAGCAAAGGAAACCATATGTTGTTGTATTTGTTGGTGTTAATGGTGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTATTGGCTTCTGCAGCACAAGGTCAGTGTCATGATGGCTGCCTGTGACACATTTCGATCGGGAGCTGTTGAACAGCTGCGGACCCATGCTCGGAGACTTCAGATACCAATATTTGAAAAGGGCTATGAGAAAGATCCTGCCATTGTTGCAAAAGAAGCAATTCAAGAAGCTTCACACAATGGTTCGGATGTGGTTCTCGTTGACACAGCTGGTCGTATGCAGGATAATGAACCACTTATGAGAGCACTGTCAAAACTCATCTACCTTAACAATCCAGATCTTGTCCTATTTGTTGGAGAAGCACTGGTTGGTAATGACGCAGTTGATCAGCTTTCAAAGTTCAATCAGAAATTAGCCGACCTTGCAACATCACCCAACCCAAGATTGATTGATGGGATCTTGCTCACGAAGTTTGACACCATTGATGATAAGGTAGGAGCAGCACTTTCCATGGTTTACATTTCTGGAGCTCCTGTGATGTTTGTGGGCTGTGGACAGTCTTACACCGACCTCAAGAAACTCAATGTCAAATCCATTGTGAAGACTCTTCTTAAATGA | 1878 | 0.4398 | MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGASYTLKWTFHNELGLVFVAVYQRILHLLYVEDLLTMVKREFSQIYDPKRTAYPDFDETFRQLKMEALARAEDLKRSSPNPVAGNAKKQVQGNNKSEFEGGNKKKSGVVAKDSGGKDGDGGNGRRSENGHSNGNFVVAKDTNLSSDVNGRQNGSPNAGAFDVHKLQKLRTKGGKKVDTTAKASKAEPNKKVIKKNRVWDDAVTTETKLDFTDHSAEDGDRNIDFVVADQGESMMDKEEIVSSESEEEEEEENVGNKRKPDAKNKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHVAAMEEALIRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAIVAKEAIQEASHNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK | 625 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu10g00944 | 625 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 416 | 624 | IPR027417 | - | |
| Vimu10g00944 | 625 | CDD | SR_alpha_SRX | 3 | 116 | - | - | |
| Vimu10g00944 | 625 | ProSitePatterns | SRP54-type proteins GTP-binding domain signature. | 598 | 611 | IPR000897 | GO:0005525|GO:0006614 | |
| Vimu10g00944 | 625 | FunFam | signal recognition particle receptor subunit alpha | 403 | 625 | - | - | |
| Vimu10g00944 | 625 | Gene3D | - | 403 | 625 | IPR027417 | - | |
| Vimu10g00944 | 625 | Gene3D | - | 284 | 401 | IPR042101 | - | |
| Vimu10g00944 | 625 | PANTHER | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA | 64 | 625 | - | - | |
| Vimu10g00944 | 625 | SUPERFAMILY | Domain of the SRP/SRP receptor G-proteins | 318 | 399 | IPR036225 | - | |
| Vimu10g00944 | 625 | MobiDBLite | consensus disorder prediction | 135 | 150 | - | - | |
| Vimu10g00944 | 625 | Pfam | SRP54-type protein, helical bundle domain | 320 | 386 | IPR013822 | GO:0005525|GO:0006614 | |
| Vimu10g00944 | 625 | CDD | SRalpha_C | 432 | 623 | - | - | |
| Vimu10g00944 | 625 | MobiDBLite | consensus disorder prediction | 287 | 315 | - | - | |
| Vimu10g00944 | 625 | FunFam | Signal recognition particle receptor subunit alpha | 1 | 125 | - | - | |
| Vimu10g00944 | 625 | Pfam | SRP54-type protein, GTPase domain | 420 | 624 | IPR000897 | GO:0005525|GO:0006614 | |
| Vimu10g00944 | 625 | FunFam | Signal recognition particle receptor subunit alpha | 286 | 401 | - | - | |
| Vimu10g00944 | 625 | Pfam | Signal recognition particle, alpha subunit, N-terminal | 28 | 300 | IPR007222 | GO:0003924|GO:0005047|GO:0005525|GO:0005785|GO:0006886 | |
| Vimu10g00944 | 625 | Gene3D | - | 1 | 124 | - | - | |
| Vimu10g00944 | 625 | MobiDBLite | consensus disorder prediction | 126 | 190 | - | - | |
| Vimu10g00944 | 625 | SMART | AAA_5 | 418 | 558 | IPR003593 | GO:0016887 | |
| Vimu10g00944 | 625 | SMART | SRP54_3 | 419 | 625 | IPR000897 | GO:0005525|GO:0006614 | |
| Vimu10g00944 | 625 | MobiDBLite | consensus disorder prediction | 151 | 177 | - | - | |
| Vimu10g00944 | 625 | SUPERFAMILY | SNARE-like | 1 | 120 | IPR011012 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu10g00944 | Vimu-Chr10 | 8453148 | 8456775 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu10g00944 | K13431 | - | gmx:100805636 | 1090.49 |