Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00904 ATGTTCTTCCACAGGGTGCTGTCCCGTTCCTCTGCAACCCTTTGTCGAACCTTCACCCTTTCTGTTTCACGAAATTCCCAACCTTTCTCCAATCACTTTCATTCTCTCCTCCACCCATCACCCAACAAGTTTATTCCAGTTGAAGCTACTTTGCGGAATCCACTGAATTCATCCTTGACTTCGAGATTCGGATTTTCTTCTTCGGCCTCATCCGAACCTGCTAGTAATGACCCTGTAAAGGCATGTGAGGAAGAAAAGGTGACTGATCAGTCTGAACAAGCCAAAGATGCTGATCAAACCAGAGAATCAGATGTAGAGAATGAATGTGATCAATCCAGAGATGATTTAATAAAGCTTGTTGCTGAGAAGGAACAGCTTTTGAAGTTGAAACACAAGGAGATTGCGGAAATGCAGGACAAAGTTCTGCGAACTTATGCGGAGATGGAGAATGTCATGGCCAGAACAAGGCGTGAAGCAGAAAATTCGAAAAAATTTGCTATACAGAATTTTGCGAAGAGTCTACTAGATGTTGCTGACAATTTGGGAAGAGCTTCCTCTGTTGTAAAGGAGAGTTTTTCAAAAATTGAATCTCCTAAGGAGTCTTCGGAAGCAGCACAACTCCTGAAAACACTTCTTGAAGGTGTTGAAATGACTGAGAAACAACTTGCAGAGGTACTGAAAAAGCATGGTGTAGAAAAATATGATCCTACAAATGAGCCATTTGATCCACACAGGCACAATGCCATCTTCCAAATCCCTGATCCTACCAAGGCCCCTGGCACTGTTGGAGTTGTTCTAAAGGCTGGATATATGCTCTATGATCGTGTTCTTCGTCCGGCAGAAGTTGGTGTAACTCAAGAAGTAGATGATAGCAAAGCAGCTGAGTGA 888 0.4302 MFFHRVLSRSSATLCRTFTLSVSRNSQPFSNHFHSLLHPSPNKFIPVEATLRNPLNSSLTSRFGFSSSASSEPASNDPVKACEEEKVTDQSEQAKDADQTRESDVENECDQSRDDLIKLVAEKEQLLKLKHKEIAEMQDKVLRTYAEMENVMARTRREAENSKKFAIQNFAKSLLDVADNLGRASSVVKESFSKIESPKESSEAAQLLKTLLEGVEMTEKQLAEVLKKHGVEKYDPTNEPFDPHRHNAIFQIPDPTKAPGTVGVVLKAGYMLYDRVLRPAEVGVTQEVDDSKAAE 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00904 295 CDD GrpE 135 284 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g00904 295 FunFam GrpE protein homolog 230 286 - -
Vimu10g00904 295 Coils Coil 120 140 - -
Vimu10g00904 295 Gene3D Head domain of nucleotide exchange factor GrpE 230 285 IPR009012 GO:0006457
Vimu10g00904 295 MobiDBLite consensus disorder prediction 78 109 - -
Vimu10g00904 295 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 231 286 IPR009012 GO:0006457
Vimu10g00904 295 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 122 230 IPR013805 -
Vimu10g00904 295 FunFam GrpE protein homolog 114 229 - -
Vimu10g00904 295 Gene3D - 118 229 IPR013805 -
Vimu10g00904 295 Pfam GrpE 111 285 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g00904 295 PANTHER GRPE PROTEIN 58 287 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g00904 295 MobiDBLite consensus disorder prediction 63 109 - -
Vimu10g00904 295 Hamap Protein GrpE [grpE]. 76 286 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g00904 295 PRINTS GrpE protein signature 238 253 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g00904 295 PRINTS GrpE protein signature 265 284 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g00904 295 PRINTS GrpE protein signature 142 158 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vimu10g00904 295 ProSitePatterns grpE protein signature. 241 284 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00904 Vimu-Chr10 8062742 8065687 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00904 K03687 - gmx:100812682 433.721