Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00888 ATGGGTTGGGTCGCAGACACAGTTCACTCTTTCAATTCGATTCAACTCAGAGAAGTATTCAACCAGATCATCACTCTCGGTTTGATTGTATCATCGGCGCTCGTCATATGGAAAGGGCTAAGCTGTGTTACCGGCAGCGAATCGCCCGTCGTCGTTGTTATTTCCGGAAGCATGGAACCTGGTTTCCAACGAGGTGACATTCTGTTTTTGCACATGAGCAAGGATCCCATTCGTGCCGGAGACATTGTGGTTTACAATATAGATGTATGTACCATTATATTATTCTTATTATTTTGTTTTGTACTGGATGTGGATTTTGAAATGCTTTCCAATATTATTCTATCTGTTTCTGGAAAAGACATTCCAATTGTTCATCGTGTGATTGAGGTTCATGACCGTAAAAATTCTGAAGAAACTTATATCCTAACAAAAGGAGACAACAATGATGACGATGACAGGATTATGTATAATTATGGCCAGAAGTGGTTACAAAAACACCATATTATAGGAAGAGCTGTAGGGTTCTTGCCTTATGTTGGTTGGGCTACAATAATAATGTCTGATTTTCCTGTTCTCAAGTATATACTGCTAGGGACATTGGGACTGCTAGTTTTAACAATGAAGGAATAA 630 0.3921 MGWVADTVHSFNSIQLREVFNQIITLGLIVSSALVIWKGLSCVTGSESPVVVVISGSMEPGFQRGDILFLHMSKDPIRAGDIVVYNIDVCTIILFLLFCFVLDVDFEMLSNIILSVSGKDIPIVHRVIEVHDRKNSEETYILTKGDNNDDDDRIMYNYGQKWLQKHHIIGRAVGFLPYVGWATIIMSDFPVLKYILLGTLGLLVLTMKE 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00888 209 Gene3D Umud Fragment, subunit A 49 184 - -
Vimu10g00888 209 PANTHER SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11 15 208 IPR001733 GO:0006465|GO:0008233|GO:0016020
Vimu10g00888 209 Pfam Peptidase S24-like 40 88 IPR015927 -
Vimu10g00888 209 SUPERFAMILY LexA/Signal peptidase 50 179 IPR036286 -
Vimu10g00888 209 CDD S26_SPase_I 49 172 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00888 Vimu-Chr10 7899789 7903231 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00888 K13280 - zof:122024487 264.618