Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00874 AACGCACCTCTCTTTCCGCGTTCTCCTTCCAGCTTTAGGGTTTCACCGGCGACTGGCCAAAAAATGGTGTCTCCGAAGCAGCTCCTAGGCACCATCGAATCAGCGCTTCTCGGCGCTTCGTCTCCGACGGCGGCGCAACGCGTAGAACTTTTGCACGCTCTTCGCACTTCGGCCATCTCCTTCCAGTCCCTTCTCTCCTATCCACCCCCAAAACCCTCTGATCGAAGCCAAGTTCAGTCGAAGTCCGTCAGGCTGCCTGATTCTCCTCCTATTTCACTTGACGACCAGGATGTGCACATTGCGCTCAAGTTGAGTGATGATCTCCATCTCAATGAAGTAGATTGTGTTCGTTTGCTTGTATCAGCTAATCAAGAGTGGGGATTAATGGGAAGGGAACCACTGGAAATTTTACGGCTTGCGGCAGGACTCTGGTATACAGAGAGAAGAGATTTGATAACATCCCTCCATTTGCTCTTAAGGGCTGTGGTGCTAGATCAGGGACTGCAAGATGATATATTGGTAGACATTCAGAAGTATCTAGAAGATCTTATCAGTTCAGGACTTAGGCAGCGGTTAATTTCTCTTATCAAGGAACTCAATAGAGAAGAACCTTCTGGTTTGGGTGGTCTTCAGTGTGAGCGCTTTATTATTGATTCAAGAGGTTCTGTTGTGGAGAGGCAGGCAGTGGTCTCTAGAGAAAGACTTATTCTTGGGCATTGTCTTGTTCTTTCGATTCTGGTTGTTCGGACAAGTCCGAAGGATATAAAAGATATTTTTTCTGTTTTGAAAGATAATGCTTCTGAAGTTAGTGAGAGCAATACCATTGTCAAACATCAGATTACCTTTTGTCTTCTCTTTGCCCTTGTGATTGCGTTTGTTTCAGATGGTTTGAGTACAGTGCCTGATAAAGCATCTGTCCTTTCTTCTAACACTTCCTTCAAACACGAATTTCATGAGCTTGTAATGGCTGCTGGAAATGATCCAATTGTTGAGGGATTTGTTGGTGGCGTAAGGCTTGCTTGGGCGGTATATTTAATGTTAATACAAGATGGTGCTGTAACAAGAGAGACTATTTCAAGTGGGTCATCAAACGAACTGGGTTTTCTTAGTCAATGCTTGGAAGTCATTTTCTCAAATAATGTTTTTCAGTTTTTACTTGATAAAGTTCTTCGTACTGCTGCTTACCAGACGGAGGATGAAGATATGGTCTACATGTACAATGCTTATCTGCACAAACTGATTACCTGCTTTTTGTCTAACCCTCTAGCAAGAGACAAGATAAAAGAAACGAAGGAGCGATCTATGAGTGTGCTTAGTACATACCGAGTTGTTGGATCTCATGATTTTGCACAAGACACTAATTCAAGTTCTCTTCATGGCCCTTTGCCATTTAATTCAATCTTGGACTTTGTGAGCGATATTTATCAGAAAGAACCAGAACTCTTGTCTGGCAATGATGTATTGTGGACATTTGCAAATTTTGCTGGAGAGGACCATACAAATTTCCACACGCTTGTGGCATTCTTGAATATGCTGAGCACCTTGGCTTGCAGTCAAGAAGGTGCTTCAAAGGTTTATGAGTTGCTGCAAGGTAAAGCATTTCGCTCAATTGGATGGAGCACTTTATTTGAATGCTTAACAATTTATGACGAGAAATTCAAACAATCTCTTCAAACTGCTGGAGCTATGTGGCCTGAAATTCAGGAGGGGGATGCTAAAGCGCTTGTGGCATACTTAAATGTTCTGAAGAAGGTTGTAGAAAACGGGAATCCAACAGAAAGGAGAACCTGGTTTCCTGATATTGAACCACTATTTAAGCTTCTTAGTTACGAAAATGTGCCTCCTTATCTTAAGGGTGCTCTGAGGAATGCAATAACCACTTTTATTCAGGTTTCTCCAATACTGAAAGACAGCATCTGGACCTACCTTGAGCAATATGATCTGCCTGTAGTTGTTGGGCCTGATATCCAGAATAGTCCACAATCTATGGGTACTCAGGTTTATGACATGCGATTTGAATTGAATGAAATTGAAGCAAGGAGAGAACAATATCCTTCAACAATATCTTTCCTTAATTTGATAAATGCTCTTATTGCAGAAGAAAGTGATTTGTCTGACAGAGGGCGAAGATTTATTGGAATCTTTAGGTTCATCTATGATCATGTTTTTGGGCCATTTCCTCAAAGAGCCTATGCAGATCCTTGTGAAAAGTGGCAGTTGGTTGGTGCCTGCCTTAAACATTTTCACATGGTTTTGAGCATGTATGGCATCAAGGATGAGGACTATGAGGGTGTAGTTGATCAGTCACGACTTACAGCAACTAAAGAATCATCACCACTTCAGACGCAGCTCCCAGTCCTAGAGTTGCTCAAAGATTTCATGAGTGGAAAAACTGCCTTTCGGAACATAATGAGTATTCTTCTTCCAGGGGTGAATTCTGTTATTGCTGAACGCAGCAGTCAATTATATGGGAAGCTTTTAGAGAATGCAGTGCAGCTTTCCCTTGAAATTATAATCCTTGTCTTTGATAAGGATTTACTTCTTTCTGATTATTGGCTTCCTCTATACCAGATACGTGCTATAGAAACAGCTTCTCAACAAGATGCTTCCCACACACACACACACTCATTCGGGAGTTGTATCTCCCGTATGGTTGGGCTTGTTCAACTATTGCTAAAATGCAATGCTTCAAACAGCTTGATAGAAGATTATGCAGCGTGCCTTGAGTTACGGTCAGAAGAGTTTCAAAATCTTGAAAATAGCAGTGATGATCCAGGCATTCTTATTATGCAACTTCTAATTGACAATATCAGCCGGCCAGCTCCAAATATCACTCATTTGCTACTTAAATTTGATCTAGATACACCAATTGAACGAACAGTTTTACAGCCTAAATTTTATTACAGTTGCTTGAAGGTTATTCTTGATATTCTGGAGGAGCTTTTGAAGCCTGATGTTAATGCATTACTTCACGAGTTTTGCTTTCAGCTCCTTTATGAATTGTGTGTAGATCCAGTAACATGTGTACCAACAATGGATCTGTTGTCAAATAAAAAGTACCAATTCTTTGTTAAGCACCTTGATACAATTGGGGTTGCTCCGCTTCCTAAAAGGAATATTAATCAGTCGCTTCGTAACAGTTCACTTCATCAGAGAGCATGGCTCTTGAAACTCTTAGCTGTTGAACTACACGCTGGTGATGTTAGTAGCTCCAATCATAGAGAAGCATGTCAGACAATCCTCTCTTATCTTTTTTCACATGGTATCAACGAAGTTGGTGGGGGCCAGACCATGTATCCATTTTTGCGTCATGATACTTCTCAAAATGCTGCTCTAGGAACTGTCAGCAAGAGTAAGGTATTTGAATTGCTTGAAATCATCCAGTTTAGATGTCCAGATTCCACTTCTCAGCTCTCAGATATTGTGGCTGGAATGAAATATGACTTGCCGGCGGAAGACATACTTGGAAATTCTGGAAACGATGGTGTGTACTATTATTCTGAGAGAGGTGATCGGCTAATTGACCTGGCCGCTTTCCATGACAAACTTTGGCAGAAATACAATTCAGCTTACTCCCAGGCAAGCAACATTGGAAATGAAGTTGAGCTAAATAATGTTCGTGAGACAATTCAACAGTTGCTTAGATGGGGTTGGAAATACAATAAAAATCTTGAGGAACAAGCTGCACAACTTCATATGTTGACAGCCTGGTCTCAGATTGTTGAGGTGTCTGCTTCTAGAAGATTAATAATGATCGAAGATCGAACTGAAATTCTTTTCCAGGTCCTTGATGCGTCTCTTAGTGCTTCTGCTTCTCAGGATTGTTCATTGAAGATGGCATTCATACTGTCCCAGGTAGCATTGACATGCATGGCTAAGCTGCGAGATGAAAGATTTTTGTTCCCTGGTAGTCTTAGTTCTGATAATATCACGTGCCTTGATCTCATTGTGGTGAAGCAATTATCCAACGGTGCTTGTCTTACTATATTGTTTAAGCTTATTATGGCAATTCTTAGAAATGAATCTTCTGAAGCCCTTAGGAGACGTCAATATGCTTTCCTTCTTAGCTATTTCCAGTATTGTCAAAATGTGGTTGATCCTGATGTTCCATCAACAGTTCTTCAATTCTTGCTGCTCAATGAACAAGACAATGAATATATTGATCTCCCAAAGATTGACAATGAACAAGCAGAACTGGCTCATGCAAACTTTTCAACTTTGAGGAAAGAAGCTCAGACCATTTTGAATTTGGTCATAAAAGATGCTACGCATGGTAGTGAGCCTGGAAAGACAATATCACTTTATGTTCTTGATGCACTGATTAGTATAGATCACGAGCGCTATTTTTTGAGCCAACTTCAGAGCAGGGGATTTTTAAGGTCTTGCTTTACAGCCATAAGCAATGTTTGCAATCAGAACAAAAGATTGTACGAGTCTACGATCATCTACTCCCTCATTGATCTTGCTTCACTTAAAACTCGCGATCGTAGTGGATCGTCATTGTATATCGCAACTTGTGTAGGAGTGGTGATTCTCGCGATGCAGTCCCTCGCAGCAGTGAGGGAGAACTGGACAGAGCTCATGGCTGATGGCGGCAGTCTTTCACTGGACTCTTTACAGAGGGCATGCACTTTTGAGGCTGAACTTGCTTTACTACTAAGAATCAGCCACAAGTATGGGAAGTCTGGAGCACAGGTACTGTTTTCCATGGGCATATTGGAGCATCTTTCATCTGGCAAGGCAATCAATTTACAGGGAAGTTTAAGGTGGGTTGAGACAAGACATAGAAGAGATGTGACTGTGGATGTTGATAGACAACGGATGATTATAACTCCAGTCATGAGATTAGTGTTTTCACTAACTTCCTTGGTTGATACATCTGACTTTTTGGAGGTGAAGAATAAAATTGTTCGTGAGGTAATTGATTTTGTCAAAGGGCATCAATCACTCTTTGATCAGGTTCTCCGTTTAGACATTGCTGAAGCAGATGAGCTAAGAATGGAGCAGATCAATTTAGTTGTTGGTATTCTTAGCAAGGTTTGGCCTTACGAAGAGAGTGACGGGTTTGGTTTTGTTCAAGGGCTTTTTGGTATGATGCGTGCTCTTTTCTCACATGATTCAAAGATTCCTAGTTTTGCTCAATCAAGAGTATCGCCTGAGAATCAGAGGAATTCAGAACTACGGATGTTTAATTTGTGCTACAGCCTGAGCTCGTATTTATATTTTCTAGTCATAAAGAAATCCCTGAGATTGCAGCCTTCAGATGCCTCGTCCAGTTACCCTACTTCTGTTGAACTTCAACAACCTACATTGAGCTTGCTCAATTCCCTTCTTTCTTCTGTTACAACTGCTCTTGAAAGGGCAGCTGAGGAGAAATCTGTATTGCTGAATAAGATCCGAGACATAAATGAACTGTCAAGGCAGGAAGTGGATGAAATCATCAATATGTGTGTCCGGCAGGACACTGTTTCATCTTCAGATAACATACAGAAAAGGAGGTACATTGCAATGGTAGAAATGTGTCGAGTTGTTGCTAATAGGGATCAGCTAATCATTTTGTTGCTCCCACTCTCCGAACATATACTGAATATCATCCTTATCCATCTTCAAGAGAGTTCTGCTGCGCTTGATTCAACCTTGACAAAAGCAATTACATATGGTTCCAAGTATGATGCACAACAAGACGTTTCTTTGTTATGTGGAAAGTTAGTCCCAACCCTTGAGCGACTTGAGTTGCTGGGTGAGGATAAAGTAGGGCACAATCTCAAAGTATTCCGCAGACTAGCAACTTCTGCCAAAGAGCTTGCAATTCAAAAATTGATTTAA 5826 0.4116 NAPLFPRSPSSFRVSPATGQKMVSPKQLLGTIESALLGASSPTAAQRVELLHALRTSAISFQSLLSYPPPKPSDRSQVQSKSVRLPDSPPISLDDQDVHIALKLSDDLHLNEVDCVRLLVSANQEWGLMGREPLEILRLAAGLWYTERRDLITSLHLLLRAVVLDQGLQDDILVDIQKYLEDLISSGLRQRLISLIKELNREEPSGLGGLQCERFIIDSRGSVVERQAVVSRERLILGHCLVLSILVVRTSPKDIKDIFSVLKDNASEVSESNTIVKHQITFCLLFALVIAFVSDGLSTVPDKASVLSSNTSFKHEFHELVMAAGNDPIVEGFVGGVRLAWAVYLMLIQDGAVTRETISSGSSNELGFLSQCLEVIFSNNVFQFLLDKVLRTAAYQTEDEDMVYMYNAYLHKLITCFLSNPLARDKIKETKERSMSVLSTYRVVGSHDFAQDTNSSSLHGPLPFNSILDFVSDIYQKEPELLSGNDVLWTFANFAGEDHTNFHTLVAFLNMLSTLACSQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEKFKQSLQTAGAMWPEIQEGDAKALVAYLNVLKKVVENGNPTERRTWFPDIEPLFKLLSYENVPPYLKGALRNAITTFIQVSPILKDSIWTYLEQYDLPVVVGPDIQNSPQSMGTQVYDMRFELNEIEARREQYPSTISFLNLINALIAEESDLSDRGRRFIGIFRFIYDHVFGPFPQRAYADPCEKWQLVGACLKHFHMVLSMYGIKDEDYEGVVDQSRLTATKESSPLQTQLPVLELLKDFMSGKTAFRNIMSILLPGVNSVIAERSSQLYGKLLENAVQLSLEIIILVFDKDLLLSDYWLPLYQIRAIETASQQDASHTHTHSFGSCISRMVGLVQLLLKCNASNSLIEDYAACLELRSEEFQNLENSSDDPGILIMQLLIDNISRPAPNITHLLLKFDLDTPIERTVLQPKFYYSCLKVILDILEELLKPDVNALLHEFCFQLLYELCVDPVTCVPTMDLLSNKKYQFFVKHLDTIGVAPLPKRNINQSLRNSSLHQRAWLLKLLAVELHAGDVSSSNHREACQTILSYLFSHGINEVGGGQTMYPFLRHDTSQNAALGTVSKSKVFELLEIIQFRCPDSTSQLSDIVAGMKYDLPAEDILGNSGNDGVYYYSERGDRLIDLAAFHDKLWQKYNSAYSQASNIGNEVELNNVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAWSQIVEVSASRRLIMIEDRTEILFQVLDASLSASASQDCSLKMAFILSQVALTCMAKLRDERFLFPGSLSSDNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRQYAFLLSYFQYCQNVVDPDVPSTVLQFLLLNEQDNEYIDLPKIDNEQAELAHANFSTLRKEAQTILNLVIKDATHGSEPGKTISLYVLDALISIDHERYFLSQLQSRGFLRSCFTAISNVCNQNKRLYESTIIYSLIDLASLKTRDRSGSSLYIATCVGVVILAMQSLAAVRENWTELMADGGSLSLDSLQRACTFEAELALLLRISHKYGKSGAQVLFSMGILEHLSSGKAINLQGSLRWVETRHRRDVTVDVDRQRMIITPVMRLVFSLTSLVDTSDFLEVKNKIVREVIDFVKGHQSLFDQVLRLDIAEADELRMEQINLVVGILSKVWPYEESDGFGFVQGLFGMMRALFSHDSKIPSFAQSRVSPENQRNSELRMFNLCYSLSSYLYFLVIKKSLRLQPSDASSSYPTSVELQQPTLSLLNSLLSSVTTALERAAEEKSVLLNKIRDINELSRQEVDEIINMCVRQDTVSSSDNIQKRRYIAMVEMCRVVANRDQLIILLLPLSEHILNIILIHLQESSAALDSTLTKAITYGSKYDAQQDVSLLCGKLVPTLERLELLGEDKVGHNLKVFRRLATSAKELAIQKLI 1941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00874 1941 MobiDBLite consensus disorder prediction 1 21 - -
Vimu10g00874 1941 MobiDBLite consensus disorder prediction 66 89 - -
Vimu10g00874 1941 Pfam Nuclear pore complex scaffold, nucleoporins 186/192/205 46 880 IPR021827 GO:0005643
Vimu10g00874 1941 Pfam Nuclear pore complex scaffold, nucleoporins 186/192/205 885 1678 IPR021827 GO:0005643
Vimu10g00874 1941 Coils Coil 1785 1805 - -
Vimu10g00874 1941 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 22 1872 IPR021827 GO:0005643
Vimu10g00874 1941 MobiDBLite consensus disorder prediction 66 86 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00874 K14310 - vvi:100266475 2628.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00874 10 7774862 7810625 Vimu10g00874 10 7774862 7810625 ECH