Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00852 ATGTCGGGGAAAGGGGCGAAGGGGTTGATCACCGGCAAAACCTCTGCCGCCAACAAAGATAAGGACAAGAAGAAGCCGATTTCACGTTCTTCTCGTGCCGGCCTTCAGTTTCTTCTTGGTATAGCTAGAAGATTGAAGCCTTTGGATTTAGAAATTGAAATCAGCCCCTTCTTGTTTCCAGTTGGTCGTATCCACCGGCTATTGAAGTCGAGGACAACCGCTAATGGTAGAGTTGGGGCTACAGCTGCTGTTTACTCTGCCGCAATCTTGGAGTATCTCACTGCTGAAGTATTGGAGCTGGCAGGGAATGCTAGCAAGGATCTCAAGGTCAAACGTATCACTCCCCGGCATTTACAGCTAGCCATTCGTGGGGATGAAGAGCTGGATACCCTGATAAAAGGAACAATTGCTGGAGGAGGAGTGATTCCTCACATTCACAAGTCTCTTATCAACAAGTCTTCTAAGGAGTAG 471 0.4798 MSGKGAKGLITGKTSAANKDKDKKKPISRSSRAGLQFLLGIARRLKPLDLEIEISPFLFPVGRIHRLLKSRTTANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00852 156 PANTHER HISTONE H2A 20 152 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu10g00852 156 PRINTS Histone H2A signature 77 92 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu10g00852 156 PRINTS Histone H2A signature 47 69 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu10g00852 156 PRINTS Histone H2A signature 92 105 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu10g00852 156 PRINTS Histone H2A signature 133 151 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu10g00852 156 PRINTS Histone H2A signature 106 120 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu10g00852 156 FunFam Histone H2A 51 156 - -
Vimu10g00852 156 Pfam C-terminus of histone H2A 126 155 IPR032454 -
Vimu10g00852 156 CDD H2A 26 152 IPR002119 GO:0000786|GO:0003677|GO:0030527
Vimu10g00852 156 Gene3D Histone, subunit A 13 156 IPR009072 GO:0046982
Vimu10g00852 156 SUPERFAMILY Histone-fold 55 133 IPR009072 GO:0046982
Vimu10g00852 156 MobiDBLite consensus disorder prediction 1 28 - -
Vimu10g00852 156 Pfam Core histone H2A/H2B/H3/H4 16 124 IPR007125 GO:0003677
Vimu10g00852 156 SMART h2a4 14 156 IPR002119 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00852 Vimu-Chr10 7568508 7570296 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00852 K11251 - gmx:100499998 246.514