Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00833 ATGGTCGATCACTACAACAAGTTGGTTAAACTAGCTGCGAGGGCTTTTTATGATGATCTGACGAGTAAAGGAGAGAATCAACCTAAATCGGGAAGGAGTGATAACAGAGGAATCGCTGTAGTGATTCTCGATGCCCTCACAAGGCGACAATGGGTCAGAGAAGAAGATTTGGCAAAAGATCTCAAATTACACACAAAACAACTTCGCCGAACTCTGCGGTTTTTTGAAGAGGAGAAGATCATTACTAGAGAATATAGAAGAGAGACAGCAAAAGGAGCCAAATTGTATAGTGCTGCTACAGCTGCTACAGTTGATGCTCAACTGACTGGAAAAGAGGGAGAAGAGAAGGTCAAGTTACACACACACTCTTACTGTTGTCTAGATTATGCACAGATATATGATGTGGTTAGGTACAGAATCCATCGCATGAAGAAGCTGCTGAAAGATGAATTGGACAACAAGAACACAATTGAAGAATATATCTGTACAAAGTGTGGAAAAAGATACAATGCTCTGGATGCATTGCGGTTAGTATCTTTTGAAGATGACGACTTTCATTGTGAAAGTTGTAATGGAAAACTTGAGGTAGAAAGTGACAAGTTTGTTGTTCAAGAAGGGGCTGATGGAGATGATAATGCAAGAAGACGACGACATGAAAAGTTAAAAGACATGCTTCAAAAGATGGAGATACAGCTCAAGCCTTTAATGGACCAACTCAGCAGGGTGAAAGATTTGCCAGTTCCAGAATTTGGTAGCCTCCTAGCATGGGAAGCTCGAGCTAGTGCTATGGGGCGTGCAGCCAACGGAGATATGGCTGGTGATTCTAAAATTTCTCAGCTTGGATATAATGGAGCACCAATGCCTTATAGTGGGGATACTAAGGTTGTGGTGGACTTCAATGGGACTGAAGGCAATAGACATGATGTTAAGTCTGAAACTGAAAGTTCATCTCTAAAGGTTTTGCCACCATGGATGATAAAATCAGGGATGGTTCTTACAAAAGAACAACGAGGAGAGGATGAGTATATCAAGGCTTATTATGCTGCCCTGCTTAAACAACAACATGAAATGGAAGCTTCTAGAAAACAAGACTTGTCAGATACATTTACTGAAAATGATCCTTCTAGCCGTGCTTCTTCTATTCGTCAAGTTGGCATCAAATCAAAACGTGAGGAAGATGATGATGATGATGGTACAGACTGGGAGCAAGCTCCAGTTGCAGGTAATTTTTCTTTTCAAGGTGATTTGAGCACATCTTGGAACAGTACTGGAAATGAAAATTACAAGGTCAATGATTTGAATGTTCAAGCTGATGTTGCTCCAGCAGATGTTGATGAAGACGAAGATGTGGACTGGGAGGAAGGTTGA 1368 0.4115 MVDHYNKLVKLAARAFYDDLTSKGENQPKSGRSDNRGIAVVILDALTRRQWVREEDLAKDLKLHTKQLRRTLRFFEEEKIITREYRRETAKGAKLYSAATAATVDAQLTGKEGEEKVKLHTHSYCCLDYAQIYDVVRYRIHRMKKLLKDELDNKNTIEEYICTKCGKRYNALDALRLVSFEDDDFHCESCNGKLEVESDKFVVQEGADGDDNARRRRHEKLKDMLQKMEIQLKPLMDQLSRVKDLPVPEFGSLLAWEARASAMGRAANGDMAGDSKISQLGYNGAPMPYSGDTKVVVDFNGTEGNRHDVKSETESSSLKVLPPWMIKSGMVLTKEQRGEDEYIKAYYAALLKQQHEMEASRKQDLSDTFTENDPSSRASSIRQVGIKSKREEDDDDDGTDWEQAPVAGNFSFQGDLSTSWNSTGNENYKVNDLNVQADVAPADVDEDEDVDWEEG 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00833 455 ProSiteProfiles TFE/IIEalpha-type HTH domain profile. 5 137 IPR017919 -
Vimu10g00833 455 Coils Coil 218 238 - -
Vimu10g00833 455 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT 2 455 IPR039997 -
Vimu10g00833 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 206 IPR013083 -
Vimu10g00833 455 MobiDBLite consensus disorder prediction 369 383 - -
Vimu10g00833 455 SMART tfiie3 37 208 IPR002853 GO:0006367
Vimu10g00833 455 FunFam Transcription initiation factor IIE subunit alpha 145 207 - -
Vimu10g00833 455 MobiDBLite consensus disorder prediction 410 432 - -
Vimu10g00833 455 MobiDBLite consensus disorder prediction 359 455 - -
Vimu10g00833 455 Pfam TFIIE alpha subunit 39 153 IPR024550 -
Vimu10g00833 455 SUPERFAMILY Zinc beta-ribbon 150 197 - -
Vimu10g00833 455 MobiDBLite consensus disorder prediction 441 455 - -
Vimu10g00833 455 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00833 Vimu-Chr10 7395366 7406743 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00833 K03136 - gmx:100779773 727.628