Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00803 ATGAGGTGGGAAAAGGTAAAGGGAACAGGAGGAGAAGGACCAGGGAGGAGGTGGGGCCACACGTGTAACGCTGTTAGAGATGGCAGACTTCTTTATCTCTTCGGTGGTTACGGCAAATTTAACTGTCAGACCAACCAAGTTCACGTATTCGACACTCTGAGGCAGAGTTGGAGTGAACCAGCAGTTAAAGGGACCCCACCTACTCCTAGGGACAGCCATAGTTGCTCTGTTGTTGGTGATAGTCTTTTTGTGTTTGGGGGTACAGATGGGACCAGGCTGCTGAATGATTTGCATATTCTAGACACTTCTTCACATACGTGGATTTTTCCAACTGTGAGAGGGGAAGCACCAGAGGCACGGGAGGGTCATGCTGCTGCAGTTATTGGCAAACGACTATTTGTGTTTGGAGGTTGTGGGAGATCTGCAAATAATACTAATGATGTGTACTACAATGACCTTTACATATTAAATACAGAAACATATACATGGCAGCGTGCTACAACATCAGGTACTCCACCATCTCCTCGAGATAGCCACACTTGTTCCTCTTGGAAAAACAAAATTATTGTGATCGGTGGTGAAGATGAACAAGATTATTATCTGTCTGATGTTCATGTTCTAGATACTGATACTCTTATCTGGAGCAAAATGTGTACGTCTAGCCAATCATTGCCACCTCGAGCTGGTCATTGTACAGTTTCTTTGGGCAATAGTTTGTTTGTTTTTGGGGGCTTTACAGAAGCTCAATGCCTATACAATGACCTGTATATGCTTGACATTGAGACTTTTGTGTGGACGAAGGTGGAAACTGCACCTAGTGGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGTTTAGATCCACATATGGGTGGTGCTCTTGTATTTTTGGGAGGTTGTAATAGAAATCTGGAGGCCCTGGATGACATGTATTACCTGTACACAGGTATTGGACAGGAAAGAGAACTCAGACCAGAGAAGTTATCCTTAAGGAAGCAATTGAAGCTGAAATGTCAAGAGCAGAATCTCAATCTTGTCCAAAACCCAGTTCTGTGTGGATATGGAGTGGATGCTGGCAGTAATCATCCTATGTCAATCTTAAACTATAACCAACAAAGTAAACTACATATCCCCGTAAGGCAACTCCTGTCTCCTGGAAAGAGAATGTTTCATGCTAAAGTTACGGAAAAAATCTCAGCAGGATATACTATTGAAACTGTTATTGATGGAAAGCCTCTTCATGGAATTCTGTTTTCAAACAAGCCAAACATTCAAAGTCCAGTTGCTAATACTTCCAATAGGAAAAGGTCTGCTAGTGAAATTGAGAATGTTGATTTAAATGACATGCTTACACAATCAGACAATGTAACAACTTCTACAGTGCTCAGGCAAGAGAAAATGGAAAAGCAACCGGAAGTACGGGGAGAGAGTTCAGAATTTCTTGAACGCCATAAAGAAGCAGATACTATTGTTGCGTCAAGTATCCCAACAACAGCTGCGGAGTCCTTAAAGGAACCTATCAACCCAGAACCTGAAGCTGTTTCTTTGAATCTAAATGTTGAGAAAAATGACTCATCAAAACCCTTAATTGAGAGCTTGAAAAACGATGGATCCAATGATGAGACAAGTTCCAAAGGTGAAATGCAAATTGGAGATGAAATAAATGTGCCAGTTTCCAATTGTGAAATTTCAGGACAAACGAGTGATGCACCAAACTCTAATGCTGATGTCCTGAAACCTGCAGCAACTGAGAGTTCTGTTTCTCCTCCAAATCAAGGTATGGAACTATGGAGAGAAGTTAGTGTAGATTCTTTGGCTTGA 1821 0.419 MRWEKVKGTGGEGPGRRWGHTCNAVRDGRLLYLFGGYGKFNCQTNQVHVFDTLRQSWSEPAVKGTPPTPRDSHSCSVVGDSLFVFGGTDGTRLLNDLHILDTSSHTWIFPTVRGEAPEAREGHAAAVIGKRLFVFGGCGRSANNTNDVYYNDLYILNTETYTWQRATTSGTPPSPRDSHTCSSWKNKIIVIGGEDEQDYYLSDVHVLDTDTLIWSKMCTSSQSLPPRAGHCTVSLGNSLFVFGGFTEAQCLYNDLYMLDIETFVWTKVETAPSGPSARFSVAGDCLDPHMGGALVFLGGCNRNLEALDDMYYLYTGIGQERELRPEKLSLRKQLKLKCQEQNLNLVQNPVLCGYGVDAGSNHPMSILNYNQQSKLHIPVRQLLSPGKRMFHAKVTEKISAGYTIETVIDGKPLHGILFSNKPNIQSPVANTSNRKRSASEIENVDLNDMLTQSDNVTTSTVLRQEKMEKQPEVRGESSEFLERHKEADTIVASSIPTTAAESLKEPINPEPEAVSLNLNVEKNDSSKPLIESLKNDGSNDETSSKGEMQIGDEINVPVSNCEISGQTSDAPNSNADVLKPAATESSVSPPNQGMELWREVSVDSLA 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00803 606 Gene3D - 113 336 IPR015915 GO:0005515
Vimu10g00803 606 Gene3D - 1 112 IPR015915 GO:0005515
Vimu10g00803 606 PANTHER KELCH REPEAT DOMAIN 1 108 - -
Vimu10g00803 606 MobiDBLite consensus disorder prediction 559 592 - -
Vimu10g00803 606 SUPERFAMILY Kelch motif 114 315 IPR015915 GO:0005515
Vimu10g00803 606 MobiDBLite consensus disorder prediction 519 595 - -
Vimu10g00803 606 Pfam Kelch motif 69 107 IPR006652 GO:0005515
Vimu10g00803 606 Pfam Galactose oxidase, central domain 175 225 - -
Vimu10g00803 606 Pfam Galactose oxidase, central domain 226 273 - -
Vimu10g00803 606 Pfam Galactose oxidase, central domain 17 67 - -
Vimu10g00803 606 MobiDBLite consensus disorder prediction 519 549 - -
Vimu10g00803 606 Pfam Kelch motif 117 160 - -
Vimu10g00803 606 SUPERFAMILY Kelch motif 3 165 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00803 Vimu-Chr10 7095530 7100140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00803 107 313 Acyl Lipid Metabolism Gene Families AT3G05420 30.415 4.21e-27 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00803 - - gmx:100785267 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00803 10 7095530 7100140 Vimu10g00803 10 7095530 7100140 ECH
Vimu7g00871 7 8525683 8526138 Vimu10g00803 10 7095530 7100140 PCT