Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00801 ATGGATAGCAGTAACTCGGAACAGGCCGTGCTTGATGGAAAACTCTACAGACACCTCAATTCTCTCATCGTCGCACATCTTCGGGACAACAATCTCACCCAGGCTGCAAGTGTTGTTGCTTCAGCAACCATGACTCCACTGAATGTGGAAGCCCCACCTAACAGGCTTCTCGACCTGGTTTCTAAGGGTCTTGCAGCGGAAAAGGGCGACATCACGAGAGGCACTGATTTCTCTGCCACACTGCCCCTGCCTCACACAGCAGCTATTGATTTCAGGCAAACTTCTAAAACTACAGTTCTATTGACTATCAAATATAATTTGTTCACTGCGCCTGATATGAAAGGTTCCTCAAAGAGCTTCCCGAAGCATGAAACGCGACACCTTTCGGAACACAAGAATATTGCCAGATGTGCTAGGTTTAGTGCTGATGGAAGGTTTGTTGCCACTGGAAGTGCCGATACTTCAATAAAGCTATTTGAGGTTTCAAAGATCAAGCAGATGTTGCTGCCAGAGGCAAAGGATGGTCCTGTGCGGCCTGTCATTCGAACATATTATGATCATATACAAGACACACACAATGTTCGATCTGTATCTTTCCATCCATCTGGGGACTTTCTGCTGGCAGGAACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGTTATCTGTCATCAAATATCCCAGAGACCAGCCCTAGTGGAGCCATAAACCAGGCATGTAATTATCTTTTTATCAGTATGGCAAACTGTGAGTTACCTAACACTACAGTCAGATATTCTTGTACAGGTGCCATGTATGTTACAGCATCTAAAGATGGTGCTATTAGGTTATGGGATGGCATCACAGCCAATTGTGTGCGGTCAATAACTGCAGCACACGGAACAGCTGAGGCTACCAGTGCAATTTTTACCAAAGATCAAAGGTATCAATACATTTTGGTGCAAATATTGGACACAGCAAAAACCATGAGTGATACTGATATAGCTATTGATGCCCATCAAGACCAACTTGTGACAGATTCTACCGTAAAGCTTTGGGAAGTCGGCTCTGGAAGATTAGTCAGACAATATCTTGGAGCTATACATACCCAGCTAAGGTGTCAGGCTATTTTTAATCAGACAGAAGAATTTATTATATTCATAGATGAACTGAGCAATGAGATCGTTATCTGGGATGCAATGACAACAGAAAAAGTTGCAAAGTGGCCTTCCAATCATGTTGGTGCACCGCGCTGGCTTGAACACTCACCAGTTGAGTCAGCTTTTATTTCCTGTGGAACTGATAGGTCAGTTCGGTTCTGGAAGGAGACTGTATAA 1329 0.4357 MDSSNSEQAVLDGKLYRHLNSLIVAHLRDNNLTQAASVVASATMTPLNVEAPPNRLLDLVSKGLAAEKGDITRGTDFSATLPLPHTAAIDFRQTSKTTVLLTIKYNLFTAPDMKGSSKSFPKHETRHLSEHKNIARCARFSADGRFVATGSADTSIKLFEVSKIKQMLLPEAKDGPVRPVIRTYYDHIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSSNIPETSPSGAINQACNYLFISMANCELPNTTVRYSCTGAMYVTASKDGAIRLWDGITANCVRSITAAHGTAEATSAIFTKDQRYQYILVQILDTAKTMSDTDIAIDAHQDQLVTDSTVKLWEVGSGRLVRQYLGAIHTQLRCQAIFNQTEEFIIFIDELSNEIVIWDAMTTEKVAKWPSNHVGAPRWLEHSPVESAFISCGTDRSVRFWKETV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00801 442 SUPERFAMILY WD40 repeat-like 121 439 IPR036322 GO:0005515
Vimu10g00801 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 128 169 IPR001680 GO:0005515
Vimu10g00801 442 Gene3D - 85 253 IPR015943 GO:0005515
Vimu10g00801 442 Pfam WD domain, G-beta repeat 125 159 IPR001680 GO:0005515
Vimu10g00801 442 Pfam WD domain, G-beta repeat 181 214 IPR001680 GO:0005515
Vimu10g00801 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 292 IPR001680 GO:0005515
Vimu10g00801 442 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 1 189 IPR044633 GO:0005848|GO:0031124
Vimu10g00801 442 SMART WD40_4 399 439 IPR001680 GO:0005515
Vimu10g00801 442 SMART WD40_4 177 219 IPR001680 GO:0005515
Vimu10g00801 442 SMART WD40_4 243 283 IPR001680 GO:0005515
Vimu10g00801 442 SMART WD40_4 121 160 IPR001680 GO:0005515
Vimu10g00801 442 Gene3D - 254 442 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00801 K14406 - gmx:100809908 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00801 10 7079832 7083933 Vimu10g00801 10 7079832 7083933 ECH