Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00793 ATGTCGGAGAGCAACCACACGGAAATCCAAATCCGTGCCCTGACCGGCGAATCAATCACTCTTCTCGTCACTCCCACCACAACCCTCCACCACCTGAAGCTTCTCCTCCGCCAATCGTTCCCCCCCGCCACCACCTCCCCCAATTTCCACCTCTTTTTCAAGGCACCACCACCACACTATTTCCCTCCTCCCTTTTCTCTTTCACCGACCGGTGAGAAATTGCGATTGCAGACTCAAATTGCCTCTTACCCCATCCAACGCGACGAGTTTCTCGTCCTCATTCCCTTCACCAAAAAGGAAAAAGAACCTTCTAGAACATCCGACTCTCTTCTGCCTAATGTTCCTCACACTACCAATGCTTCAAGTTCGACCTCTGAACTCGCGGATTCTACGTGGTCCTCCATAAAGGAGGATTTATCACTTTTACGTAATGCGTCTAATTCCGAGTCAGGAAATGAAAAACCGTTGGAGACCTCAACCGAAGGGGGTTTAGGTCGTGAGAAGCAGATGGAGCTTCCCTATCATCTTATACTGAACACATTGCGAGATGGTAGCGAGGGTGGTCCACTTGGCGAGCACAATTGCGAGGTTTTCGCGAAGGTTTTGGAATCCGTGAATTGTTTATCGGAACTGCCTCTCGGACACTGCAAGTTGCTGAAACGAGCTCGTTCGAAAGGAGGTGGTGGAGGCGGCGGTGGCATGAGAAAACGTGTCAGTGACGGTGTTATATGTTTGTGTCCACCGTGGTTGAAGATAGTAGTGAAGGCGTTTGCATTTGTGAACATTTTTTCCGCGTTTATTTATTTGCAACTTCGAGATTTGACCTCGAGTCTGCTGGAGGAGGCGCTTAGTGAGCTTGCTAAGTTTGGGGTTAAACTTGGCCTCGGTGACATCAAGAATCTTTCGCTTCTCTGTCCTCATATGGTATGTTTCAGGGATGATGTAGAGAAGACAAGTTTTAGTGATAACATTGTTGTCCTTAATCATTCAACAGACAATAAAGATCTAGTTGAAGAAAATCCTAAAAGAGTGCGCAAGTGGTTGTATATTTCAAAGACTGTCAGTACATTGAAGAGAAGGGACAGTTCTTTCCGTAAATTTCTAGGATGGGCTTTTGAACAGCTGCCGTATGAATTTGGAGATGAGATGACTGTGGGGATTTCCTTGGAAGAGTTGCTTGTTGCAGTCAAGGACAATGATTTTGTCAAAAAAGAAGACAAACACAAACGTGTAAAGAGAAGCAAAACTACCTCAAAATCTGACTTAAACCATATTGGGTGTCATGACACAAAGTCATTAACGGCTGTAGAGATGATTGATCATCTTAAGAAAGGAATTGGATCAGAAGGGCAGATTGTGCATATTGAAGACATATGTGCCAGGAAAGCAATTTACAGCGAGATCCCTATTGATCTATCAGAGAAAATGAGATCTGCACTGAAGTGTATTGGAGTTTCCAAATTTTACAGTCACCAGGCAGAGTCTATAGAAGCTTCTCTTCATGGTGAAAATGTTGTTGTGGCTACAATGACATCTAGTGGCAAATCCCTTTGCTATAATCTACCAGTTCTAGAAGTTTTGTCTACGAATTCATCTCCATGTGCTTTGTACATATTTCCCACAAAGGCATTAGCTCAAGATCAACTAAGAGCTTTGTTACACATGACAAAAGGTTTTGATAATGACTTTAATATTGGTATATATGATGGTGATACTTCTCAGAGTGAGAGGATGTGGCTCCGTGATAATTCTAGATTGTTGATCACAAATCCAGATATGTTACACATGTCAATATTGCCCCATCATCAACAGTTTAGTCGAATTTTATCAAACCTAAGGTTTGTGGTAATTGATGAAACTCATACTTACAAGGGAGCGTTTGGAAGTCACACCACCCTTATTTTGAGGAGGCTAAAACGACTCTGTTCACATGTATATGGATCTGTTCCTTCTTTCGTTTTTTCTACTGCAACTTCTGCAAATCCTCGGGAGCATTCTATGGAACTTGCAAATTTATCTACGCTGGAGCTATTTCAGAATGATGGAAGTCCATCTACAAGGAAACTTTTTGTCCTTTGGAACCCTGCTGTGCGTCCAAAATCTTTCATTAAAAAAGCTCAGTTTGCTATGGGAACTGATGAGTTGGCTGATGAAAGTGCTAATTTTGTTCGTTCAAGCCCAATTGTGGATGCTTCACGTCTTTTTGCAGAAATGGTTCTGCACGGTCTTCGCTGTATTGCATTTTGTAAATCACGGAAACTTTGTGAGCTTGTTTTATCATACACCCGTGAGATTCTTCATGAGACAGCCCCGCATCTGGTTGATTCCATATGTGCATATCGTGGTGGCTACATTGCAGAGGAAAGAAGAAAAATAGAGAGTTCATTTTTTGGTGGTGAAATATGTGGTGTTGCGGCAACCAATGCTCTTGAGTTGGGCATTGATGTTGGAGAAATTGATGCCACTCTGCATCTAGGATTTCCTGGTAGTATTGCAAGCTTATGGCAACAAGCTGGTAGAGGTGGGAGGAGAGATAAACCATCGCTTGCTGTCTATGTTGCATTTGGGGGGCCTCTTGATCAATACTTCATGAGACATCCCAATAAACTTTTTGGAAGACCAATTGAATGTTGTCATGTTGATTCTCAAAACAAAAAGATTCTTGAGCAACATTTGGTCTGTGCTGCTCATGAACACCCTCTAAGTGTGAACTACGATGAACAATATTTTGGTCCTTGCTTGGAGAGTGTTATAATTTCTCTAAAAGCTGCAGGATACTTGAGTTCTATTCTATCATCTGATTCTTCTAGAATATGGAACTACATTGGTCCTGAGAAATTACCCTCACATGCAGTCAATATCCGAGCAATAGAAACTGTAAGATACAGTGTCATAGATCAGAAAAAAAATAAAGTCCTTGAAGAGATAGAGGAAAGCAAGGCATTCTTTCAGGTATATGAAGGTGCCGTGTACATGTGCCAGGGAAAAACCTATTTGGTTGAAAAATTAGATCTGTCTAATAAAACTGCTTTCTGCAAAGAGGCTGATCTAAAGTATTATACAAAGACTCGAGATTACACTGATATTCATGTCATTGGGGGTAATGTTGTATGTATTCTCCTGCTTGCTCGAGATCCTTTGGATTATCTTCATGAGTTTTATATTGCTTATCCGCTCAAAGTAGAAACGAACAAGTTTCCAAAATCAAATGCCCGGGCTGATATATGCAAAGTAACAACTACTTGGTTTGGCTTTTATCGTATTTGGAGAGGAAGCAATCAAATCTTTGATGCTGTTGACCTCGCACTTCCTCATTACTCATACGAGTCACAGGCAGTTTGGGTTCCTGTGCCACTGTTTATAAAAGAAGCAGTAGTCAAGCAAGCTTATGATTTCCGTGGAGGTCTGCATGCTGCTTCACATGCAATTTTGCACGTAGTGCCTTTACACATCACTTGCAACTTGTCTGACTTGGCTCCTGAATGCCCAAACCCTCATGATACCCGATTTTATCCCGAAAGAATTCTAATATATGATCAACATCCCGGAGGATGTGGAATTTCAGTGCGGGTTCAACCCTATTTTACAAAGTTCCTGGAAGCCGCACTAGAGCTTCTCACATGTTGCTGCTGCTCAGCGGAAGTGGGTTGCCCTAATTGTGTTCAGAGCTTTGTTTGCCACGAATATAACGAGGTTTTGCACAAGGATGCAGCCATCATGATCATAAAGGGTATTCTGGATGCGGGAAACTAG 3753 0.4221 MSESNHTEIQIRALTGESITLLVTPTTTLHHLKLLLRQSFPPATTSPNFHLFFKAPPPHYFPPPFSLSPTGEKLRLQTQIASYPIQRDEFLVLIPFTKKEKEPSRTSDSLLPNVPHTTNASSSTSELADSTWSSIKEDLSLLRNASNSESGNEKPLETSTEGGLGREKQMELPYHLILNTLRDGSEGGPLGEHNCEVFAKVLESVNCLSELPLGHCKLLKRARSKGGGGGGGGMRKRVSDGVICLCPPWLKIVVKAFAFVNIFSAFIYLQLRDLTSSLLEEALSELAKFGVKLGLGDIKNLSLLCPHMVCFRDDVEKTSFSDNIVVLNHSTDNKDLVEENPKRVRKWLYISKTVSTLKRRDSSFRKFLGWAFEQLPYEFGDEMTVGISLEELLVAVKDNDFVKKEDKHKRVKRSKTTSKSDLNHIGCHDTKSLTAVEMIDHLKKGIGSEGQIVHIEDICARKAIYSEIPIDLSEKMRSALKCIGVSKFYSHQAESIEASLHGENVVVATMTSSGKSLCYNLPVLEVLSTNSSPCALYIFPTKALAQDQLRALLHMTKGFDNDFNIGIYDGDTSQSERMWLRDNSRLLITNPDMLHMSILPHHQQFSRILSNLRFVVIDETHTYKGAFGSHTTLILRRLKRLCSHVYGSVPSFVFSTATSANPREHSMELANLSTLELFQNDGSPSTRKLFVLWNPAVRPKSFIKKAQFAMGTDELADESANFVRSSPIVDASRLFAEMVLHGLRCIAFCKSRKLCELVLSYTREILHETAPHLVDSICAYRGGYIAEERRKIESSFFGGEICGVAATNALELGIDVGEIDATLHLGFPGSIASLWQQAGRGGRRDKPSLAVYVAFGGPLDQYFMRHPNKLFGRPIECCHVDSQNKKILEQHLVCAAHEHPLSVNYDEQYFGPCLESVIISLKAAGYLSSILSSDSSRIWNYIGPEKLPSHAVNIRAIETVRYSVIDQKKNKVLEEIEESKAFFQVYEGAVYMCQGKTYLVEKLDLSNKTAFCKEADLKYYTKTRDYTDIHVIGGNVVCILLLARDPLDYLHEFYIAYPLKVETNKFPKSNARADICKVTTTWFGFYRIWRGSNQIFDAVDLALPHYSYESQAVWVPVPLFIKEAVVKQAYDFRGGLHAASHAILHVVPLHITCNLSDLAPECPNPHDTRFYPERILIYDQHPGGCGISVRVQPYFTKFLEAALELLTCCCCSAEVGCPNCVQSFVCHEYNEVLHKDAAIMIIKGILDAGN 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00793 1250 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 730 888 IPR001650 -
Vimu10g00793 1250 Gene3D - 731 885 IPR027417 -
Vimu10g00793 1250 CDD SF2_C_Hrq 690 854 - -
Vimu10g00793 1250 CDD DEXHc_Hrq1-like 488 669 - -
Vimu10g00793 1250 MobiDBLite consensus disorder prediction 102 129 - -
Vimu10g00793 1250 Pfam DEAD/DEAH box helicase 490 659 IPR011545 GO:0003676|GO:0005524
Vimu10g00793 1250 Pfam MrfA Zn-binding domain 1139 1221 IPR018973 -
Vimu10g00793 1250 Pfam Helicase conserved C-terminal domain 739 843 IPR001650 -
Vimu10g00793 1250 PANTHER ATP-DEPENDENT HELICASE HRQ1 31 1248 - -
Vimu10g00793 1250 MobiDBLite consensus disorder prediction 107 129 - -
Vimu10g00793 1250 Gene3D - 461 679 IPR027417 -
Vimu10g00793 1250 FunFam DEAD/DEAH box helicase 723 872 - -
Vimu10g00793 1250 SMART ultradead3 484 690 IPR014001 -
Vimu10g00793 1250 MobiDBLite consensus disorder prediction 144 165 - -
Vimu10g00793 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 851 IPR027417 -
Vimu10g00793 1250 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 496 677 IPR014001 -
Vimu10g00793 1250 SMART helicmild6 764 845 IPR001650 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00793 - - gmx:100819522 2048.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00793 10 6984473 6995052 Vimu10g00793 10 6984473 6995052 ECH