Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00782 ATGAAGGTCCGGTCGGTGAAATTAAGGGAGGCCCACGGTGCCATTGGCGGCCGCGCGTCTTTCTGCTCCATTCTGTGGGACCAGCAAGCCAATCATTTGGTTACCGCTTCCTCTTCCGACATTTCCATTTGTATCCACGACCCCCTTTCCCCCTCCATCTCCCCAAAAATTCTCCGCCACCACCGCGACGGCGTCACCGCCTTGGCTCTTAGCCCCAATTCCACTTGCCTCGCTTCCGGATCCATCGATCGCTCCGTCAAACTCTACAAGTTCCCCGGTGGAGAGTTTGAGAGAAACATTACAAGGTTTACACTCCCAATACGTTCCTTGGCATTTAACAAATCAGGGAGCATGGTTGCTGCTGCTGGTGATGACGAGGGTATCAAGCTTATTAATACATTTGATGGTACCATTACTAGGGTTCTTAAAGGACACAAAGGGTCTGTCACTGGCTTGGCTTTTGACCCTAATGGTGAATATTTAGCCTCTATGGATTCAACTGGAACTGTTATTTTGTGGGAGCTTCAGTCTGGGAAAATCATTCATAACCTCAAAGGCATAGCTCCTGACACTGGACTAGATGTTTCAGCTGTGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCTGGTTTGAAAAATGATGTTGTAATGTATGACAGGGACACTGCTGAGAAGTTGTTTTCTTTGAGAGGGGATCACATACAGCCAATATGTTTCTTGTGTTGGTCACCCAATGGCAAGTACATTGCTACCTCTGGTTTAGACAGGCAGGTTCTGATCTGGGATGTTAATAGGAAGCAGGACATTGACAGACAGAGGTTTGATGAAAGAGTGTGTTGCATGGCGTGGAAGCCAATTGGGAATTCTTTGGCTGTTGTGGATGTTATGGGGAAGTATGGTATTTGGGAAAATGTTATTCCTTCGTCTATGAAGTCTCCAACTGAGGATATACCCGTGAAATACAAGAGCAATGGGGTTCTTTTGTTTGATGAGGAGGATCATGAAAATAGTACAAGTGGAAGCTTGAGTGATATTGGTGAAAATAGTAATGAGGAATCTGAGCCAACAAGCAGGAAAAGATTGCGTAAACACTCCTTGAGTGAGGAAAATTTAGGTGAGGATGGATATGAGGAAATTGCATTGTATCCGAAGGTTGATTCTCACAATAAACGAAATAGATCAAGCAAGGAAAAATTGGATAGTGGGAATATGGGATTGAGAGGCACCATGATAACATCTAAGGCAAAAAGGCAGGAGGCATTTCAGCCAGGATCTACACCTTTTCAGCCTGGGAAAAGGCGTTTCTTATGCTACAGCATGCTTGGATGTATAACATCCATTGAACACGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCGACGAGTTCCTTCAATGACTGATCATTTTGGATTCACAATGGCAGCTTTGAGTGAGAGTGGGAGCGTCTTTGCAAATCCTTGTAAGGGGGAGAAGAACATGAGTACCCTCATGTATCGCCCATTTAGTAGCTGGGCTAACAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGTGCTGCTTGGATTGCTGCCGTAACTAGTTTGAACTATCTTCGCATCTTTTCTGAGAGTGGTTTGCAGAAACATGTATTTTCACTAGATGGGCCAGTGTTGACTGCATCCGGTTTCAAGGAGAAGCTTGCAGTTGTCACTCATGTCTTTGATTGCCTTTCCTCAAATGATCAGATGCTAGAGTTTATAGTATTTAATATTCCTCAAGGGACCCAACTCCTTCAAGGTCGCTTACCAATATCTCCTGGTTCATCCCTAAGTTGGTTTGGGTTTAGCGAGGAAGGCCAACTGTGTTCATACGATTCGAAGGGTGTGCTAAGATCGTATACAAGCCAATTTGGTGGCAGATGGGTCCCACTCTTCAGTGCTTTAAAAGAGAAGTCAAACGAAAACTACTGGGTGACGGGGTTGAATGCAAGCAAGTTATTTTGTGTGGTTTGCAAAAAGCCTGAAGAGTTCCCTCCGATGCCTAAGCCAGTTCTCACTCCGTTAAGTCTTTCATTTCCTCTTGCTTCCTCTGACTTGGGATCTGAAGTCCATGAAAACGAGTTTATGATGAACAACTTGCATCTCTTTTTGGTTTGTTTTTCTTATACCCTTTTCAAATTTAATGATCATAACTCTCTTTTAGCGAGCCAGTCACAAGTCTTGATTCAGATCTACTTCACTTGTACCTTTAGTTTGAGTTGTCATTATGAGTTTTATCCAATACCTAAATTTGTAAACATGAGACATGCAGATTCAGAGAAGAATGGAAGAAATGGCATCTGTAGGTCTGGACACTACTTCACTTGA 2397 0.4376 MKVRSVKLREAHGAIGGRASFCSILWDQQANHLVTASSSDISICIHDPLSPSISPKILRHHRDGVTALALSPNSTCLASGSIDRSVKLYKFPGGEFERNITRFTLPIRSLAFNKSGSMVAAAGDDEGIKLINTFDGTITRVLKGHKGSVTGLAFDPNGEYLASMDSTGTVILWELQSGKIIHNLKGIAPDTGLDVSAVNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHIQPICFLCWSPNGKYIATSGLDRQVLIWDVNRKQDIDRQRFDERVCCMAWKPIGNSLAVVDVMGKYGIWENVIPSSMKSPTEDIPVKYKSNGVLLFDEEDHENSTSGSLSDIGENSNEESEPTSRKRLRKHSLSEENLGEDGYEEIALYPKVDSHNKRNRSSKEKLDSGNMGLRGTMITSKAKRQEAFQPGSTPFQPGKRRFLCYSMLGCITSIEHDGYSHIEIDFHDTGSTRRVPSMTDHFGFTMAALSESGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGAAWIAAVTSLNYLRIFSESGLQKHVFSLDGPVLTASGFKEKLAVVTHVFDCLSSNDQMLEFIVFNIPQGTQLLQGRLPISPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSQFGGRWVPLFSALKEKSNENYWVTGLNASKLFCVVCKKPEEFPPMPKPVLTPLSLSFPLASSDLGSEVHENEFMMNNLHLFLVCFSYTLFKFNDHNSLLASQSQVLIQIYFTCTFSLSCHYEFYPIPKFVNMRHADSEKNGRNGICRSGHYFT 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00782 798 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Vimu10g00782 798 MobiDBLite consensus disorder prediction 336 370 - -
Vimu10g00782 798 MobiDBLite consensus disorder prediction 386 404 - -
Vimu10g00782 798 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Vimu10g00782 798 Pfam WD domain, G-beta repeat 138 173 IPR001680 GO:0005515
Vimu10g00782 798 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Vimu10g00782 798 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Vimu10g00782 798 SUPERFAMILY WD40 repeat-like 19 307 IPR036322 GO:0005515
Vimu10g00782 798 FunFam Transducin family protein / WD-40 repeat family protein 195 322 - -
Vimu10g00782 798 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Vimu10g00782 798 Gene3D - 194 308 IPR015943 GO:0005515
Vimu10g00782 798 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Vimu10g00782 798 Gene3D - 2 193 IPR015943 GO:0005515
Vimu10g00782 798 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Vimu10g00782 798 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 729 - -
Vimu10g00782 798 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Vimu10g00782 798 MobiDBLite consensus disorder prediction 386 410 - -
Vimu10g00782 798 SMART WD40_4 135 174 IPR001680 GO:0005515
Vimu10g00782 798 SMART WD40_4 226 266 IPR001680 GO:0005515
Vimu10g00782 798 SMART WD40_4 268 307 IPR001680 GO:0005515
Vimu10g00782 798 SMART WD40_4 51 90 IPR001680 GO:0005515
Vimu10g00782 798 SMART WD40_4 93 132 IPR001680 GO:0005515
Vimu10g00782 798 SMART WD40_4 177 223 IPR001680 GO:0005515
Vimu10g00782 798 SMART WD40_4 2 47 IPR001680 GO:0005515
Vimu10g00782 798 MobiDBLite consensus disorder prediction 355 370 - -
Vimu10g00782 798 Pfam Minichromosome loss protein, Mcl1, middle region 424 704 IPR022100 -
Vimu10g00782 798 CDD WD40 26 296 - -
Vimu10g00782 798 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00782 58 272 Miscellaneous Gene Families AT5G08390 23.502 7.78e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00782 K11274 - gmx:100809300 1304.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00782 10 6891260 6897564 Vimu10g00782 10 6891260 6897564 ECH