Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00780 ATGAAGGAGGTGCTGTTGGGTGGGGGAGATAAGATTGAGAGGAAGAAAGCGAGGGTGGTTTGGGAAGGGTTGATGATGATGGGTCTCAAAGGGGAGAGTAACAACAAGCTGAGGAATTCGATGGTGGTGTCATCGTCGTCGTCGAGGTCGTCGAGGATGAAGCTGTGGATGATACGTGCGACCACATCGGTGTTGCTATGGACCTGCGTCGTTCAGTTAACGGCTTTGGGTGACGTGTGGGGGCCTAGAGTCTTGAAAGGGTGGCCTGCGTGTTTCACTTACGAATCTGCGCTCACTGAGTTTCCGTCTTCTACCCCTGTAGTGCTCCCACCCAAGAGGGTGTATAAGAACAATGGTTACTTGATGGTGTCGTGCAATGGAGGACTGAACCAAATGAGAGCAGCGATATGTGACATGGTGGCTATTGCAAGGTATTTAAACGTGACACTTATAGTGCCTGAATTGGATAAAACGTCCTTTTGGGCTGACCCCAGTGAGTTCCGAGACATCTTTGATGTGGATCATTTCATTACATCCTTGAGGGATGAGGTTCGGATATTGAAAGAGTTGCCTCCTAGACTGAAGACGAGAGTGGAGAAGGGATTACTTTACACCATGCCACCGATTAGTTGGTCTGATATATCATACTATAAGAACCAGATTCTACCTTTGATACAAAAGTACAAAGTCGTCCATTTAAATCGAACTGATGCTCGGCTGGCCAATAACGAACAACCTTTGGAGATTCAGAGGCTGCGATGCAGAGTCAATTTTAGTGCTCTTAGATTTACTTCTCAGATTGAGGACTTAGGCAAAAGGGTGATCAAGCTTCTGAGGCAAAAAGGCCCATTTCTGGTGCTTCATCTCAGGTATGAAATGGACATGTTGGCATTTTCAGGCTGTACACAAGGTTGCAACAGTGATGAGGTGGAAGAGTTGACAAGGATGAGATATGCTTATCCTTGGTGGAAAGAAAAAATAATTAATTCTGATTTGAAGAGAAAGGATGGTCTGTGTCCTTTAACACCTGAGGAGACTGCTCTTACACTTAGGGCCCTTGACATCGATAAAAACATTCAAATCTACATTGCAGCTGGGGAAATATACGGTGGAAACAGGAGAATGGCAAGTCTTGCGGAGAACTATCCAAGACTGGTCAGAAAGGAAACACTGTTGGAACCATCGGACCTTCAGTTCTTCCAAAATCATTCCTCTCAGATGGCAGCATTGGATTACCTTGTCTCACTAGAGAGTGATATTTTTGTTCCTACATATGATGGAAATATGGCCAAAGTAGTCGAGGGACATCGGAGATATCTTGGGTTCAAGAAGACGATTTTGTTGAACAGAAAGCTCCTAGTTGATTTGATAGATCAATACCATAATGGAGAATTGAACTGGGAGGAATTCTCTTCAGCTGTGAAGGAAGCTCATGCTGATCGTATGGGCAGTGCAACTAAAAGATGGGTAATCCCTGACAGGCCCAAAGAAGAGGACTATTTCTACGCCAATCCAGAGGAATGTTTAGAACTATCAGATGGTATGTTGAGCAGTACGTGA 1560 0.4481 MKEVLLGGGDKIERKKARVVWEGLMMMGLKGESNNKLRNSMVVSSSSSRSSRMKLWMIRATTSVLLWTCVVQLTALGDVWGPRVLKGWPACFTYESALTEFPSSTPVVLPPKRVYKNNGYLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWADPSEFRDIFDVDHFITSLRDEVRILKELPPRLKTRVEKGLLYTMPPISWSDISYYKNQILPLIQKYKVVHLNRTDARLANNEQPLEIQRLRCRVNFSALRFTSQIEDLGKRVIKLLRQKGPFLVLHLRYEMDMLAFSGCTQGCNSDEVEELTRMRYAYPWWKEKIINSDLKRKDGLCPLTPEETALTLRALDIDKNIQIYIAAGEIYGGNRRMASLAENYPRLVRKETLLEPSDLQFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRYLGFKKTILLNRKLLVDLIDQYHNGELNWEEFSSAVKEAHADRMGSATKRWVIPDRPKEEDYFYANPEECLELSDGMLSST 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00780 519 PIRSF UCP009360 18 506 IPR024709 -
Vimu10g00780 519 PANTHER OS02G0726500 PROTEIN-RELATED 47 509 - -
Vimu10g00780 519 Pfam GDP-fucose protein O-fucosyltransferase 120 440 IPR019378 -
Vimu10g00780 519 CDD O-FucT_plant 120 445 IPR024709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00780 Vimu-Chr10 6875942 6878760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00780 116 509 Miscellaneous Gene Families AT2G37980 50.000 1.03e-131 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00780 K23280 - gmx:100778901 932.939