Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00758 ATGGTTCCTCTTAGTCTCTCCTCACAACAATTATTTTCAAATCTTCGTTTCATTTCCGTCTCCACCTTCAATCCTTATCTTAGGTACATTTGTTCTGACTACCCAGAATCTCAAAACGCAAGACTCAGATCACGAAATGAAAGTAAAACGGCCAAAACCATGGCCAATCTTATCAATTCCAAACCATGGTCAAACGCGTTGGTCTCGTTTCTGCCCACCCCTCTCTCCAAAACGACGGTGCTCCGAACCCTTCGCCTCATCAGGGACCCTTCCAAAGCCCTTCGCTTTTTCAAGTGGGCTCAGCAAAGTGGTTTTTCCCACACAGCTCAGTCTTACTTCATCTTGCTACAAATTCTGGGTCGCCATAGGAACCTCAACGTTGCCCGGAACTTGCTTTTTTCCATCGAGAAAAAGTCTAACGGAACCGTCAAGCTTGAGGACAGGTTCTTCAATACCCTCATCAGAAGCTACGCCGAAGCAGGCCTCTTCAAAGAGTCCTTGAAGCTTTTTCAGACCATGAAGTCCGTTGCTGTTTCCCCCTCCGTGGTTACCTTCAACTCTGTTTTGTCTATTTTGCTTAAAAGGGGTCGCACCAATATGGCCAAAGAGGTGTATGATGAAATGCTTCACACGTACGGTGTTAGTCCAGACACTTGTACATACAATGTTTTGATCAGAGGGCTTTGCAAAAACTCAATGGTCGATGAAGGGTTTCGGTTCTTTAAAGAGATGGCTAGTTTTAATTGTGACCCGGATGTTGTCACGTATAACACTCTTGTTGATGGTTTATGTAGAGCAGGGAAGGTTAGAATTGCTCGGAATTTAGTAAATGCTATGAGCAAGAAATGTGAGGGTTTGAATCCTAATGTTGTTACTTATACCACTTTGATCCGAGGGTATTGTATGAAGCAAGAAGTTGATGAGGCATTGGTAGTTTTTGAAGAGATGAGTGGCCGGGGTATTGAGCCGAACATGGTTACCTATAATACTTTGATAAAAGGGCTTTGTGAGGTACACAAGTTGGACAAGATGAAAGATGTTTTGGAATTAATGAAAGACAATGGGGGTTTTAGCCCTGATACATTTACCTTTAATACAATTATTCATTCGCATTGTTGTGCAGGAAATTTGGATGAAGCATTGAAGGTGTTTGAAAGTATGAAGAAATTTCAGATCCGCATGGATTCAGCCTCGTACAGCCCTCTGATACGTTGTTTGTGTCAGAAAGGGAACTATGATATGGCAGAGGTGTTATTTGATGAGTTATTTGAGAAGGAAATCCTATTGAGTAATTTTGGCTCCAAACCACTTGCTGCTGCTTATAGTCCTCTTATTCAGTATTTGTGTGAACATGGGAAGAGTAAGAAGGCCGAGAGGGTGATGAGACAGTTAATGAAAAGGGGCACACAAGATGGCCAATTATACAACACATTGATTATGGGGCATTGTAAAGAAGGTGCATACGAAAGTGGATATGAGCTTTTAGTGTGGATGCTGAGAAGAGACTTTCTGCCTGATGTTCATATATACGATTCCATGATTGATGGTTTTCTTTTAAAGAATAAGCCTCTGCTTGCAAAGGAGACACTAGAGAAAATGCTTAAGAGCTCCTATCAACCTAAAACAGCCACCTGGCATTCCATACTAGCAAAACTTTTGGAAAAGGGTTGTGCTCATGAGTCTGCCTGTGTTATTTTGATGATGCTGGAGAAAAATGTTAGACAGAATATAAACCTGTCAACTGAAAGTTTAAAGCTACTTTTTAGATGTGGGCAGCAGGAAAGAGCGTTTGAGATTATTGATTTGCTTTATAAGAATGGATACCGTGTTACACTAGAAGAAGTGGTTCAATTTCTTTTTAAGAGAGGAAAGCTATCAGAAGCATGCAAAATGTTGTTTTTTAGTTTGAAAAATCATCAGAATGTGAATATTGATTTGTGTAATGCAATTGTTCTGAATCTTTGTAAAACTAACAAGGTCTCAGAAGCATTTAATTTATGCTATGAATTGGTGGAGAAAGGTTTATGTCAGGAATTGACATGTCTAAATGATCTACTGGCTGCTTTAGAAGAAGGGGGAAGAAGAGAAGAAGCTATATTTATATCAAAGAGATTACCAAGACTGGAGCATTTAGATGAATCTAAAGGAAATCATAGCTCTAAGAAGTTCAGGCCTATTAAAGTGTGA 2187 0.401 MVPLSLSSQQLFSNLRFISVSTFNPYLRYICSDYPESQNARLRSRNESKTAKTMANLINSKPWSNALVSFLPTPLSKTTVLRTLRLIRDPSKALRFFKWAQQSGFSHTAQSYFILLQILGRHRNLNVARNLLFSIEKKSNGTVKLEDRFFNTLIRSYAEAGLFKESLKLFQTMKSVAVSPSVVTFNSVLSILLKRGRTNMAKEVYDEMLHTYGVSPDTCTYNVLIRGLCKNSMVDEGFRFFKEMASFNCDPDVVTYNTLVDGLCRAGKVRIARNLVNAMSKKCEGLNPNVVTYTTLIRGYCMKQEVDEALVVFEEMSGRGIEPNMVTYNTLIKGLCEVHKLDKMKDVLELMKDNGGFSPDTFTFNTIIHSHCCAGNLDEALKVFESMKKFQIRMDSASYSPLIRCLCQKGNYDMAEVLFDELFEKEILLSNFGSKPLAAAYSPLIQYLCEHGKSKKAERVMRQLMKRGTQDGQLYNTLIMGHCKEGAYESGYELLVWMLRRDFLPDVHIYDSMIDGFLLKNKPLLAKETLEKMLKSSYQPKTATWHSILAKLLEKGCAHESACVILMMLEKNVRQNINLSTESLKLLFRCGQQERAFEIIDLLYKNGYRVTLEEVVQFLFKRGKLSEACKMLFFSLKNHQNVNIDLCNAIVLNLCKTNKVSEAFNLCYELVEKGLCQELTCLNDLLAALEEGGRREEAIFISKRLPRLEHLDESKGNHSSKKFRPIKV 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00758 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 216 IPR002885 -
Vimu10g00758 728 Gene3D Tetratricopeptide repeat domain 472 611 IPR011990 GO:0005515
Vimu10g00758 728 Gene3D Tetratricopeptide repeat domain 355 471 IPR011990 GO:0005515
Vimu10g00758 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Vimu10g00758 728 Pfam PPR repeat family 288 336 IPR002885 -
Vimu10g00758 728 Pfam PPR repeat family 216 265 IPR002885 -
Vimu10g00758 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Vimu10g00758 728 Pfam PPR repeat 440 468 IPR002885 -
Vimu10g00758 728 Pfam PPR repeat 648 675 IPR002885 -
Vimu10g00758 728 Pfam PPR repeat 475 496 IPR002885 -
Vimu10g00758 728 Pfam PPR repeat 509 536 IPR002885 -
Vimu10g00758 728 Pfam PPR repeat 398 425 IPR002885 -
Vimu10g00758 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Vimu10g00758 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Vimu10g00758 728 Pfam Pentatricopeptide repeat domain 150 192 IPR002885 -
Vimu10g00758 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Vimu10g00758 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Vimu10g00758 728 Gene3D Tetratricopeptide repeat domain 612 710 IPR011990 GO:0005515
Vimu10g00758 728 Pfam PPR repeat 356 388 IPR002885 -
Vimu10g00758 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Vimu10g00758 728 NCBIfam pentatricopeptide repeat 183 218 IPR002885 -
Vimu10g00758 728 NCBIfam pentatricopeptide repeat 440 468 IPR002885 -
Vimu10g00758 728 NCBIfam pentatricopeptide repeat 398 427 IPR002885 -
Vimu10g00758 728 NCBIfam pentatricopeptide repeat 291 324 IPR002885 -
Vimu10g00758 728 NCBIfam pentatricopeptide repeat 326 361 IPR002885 -
Vimu10g00758 728 NCBIfam pentatricopeptide repeat 362 395 IPR002885 -
Vimu10g00758 728 NCBIfam pentatricopeptide repeat 254 282 IPR002885 -
Vimu10g00758 728 NCBIfam pentatricopeptide repeat 150 181 IPR002885 -
Vimu10g00758 728 NCBIfam pentatricopeptide repeat 219 253 IPR002885 -
Vimu10g00758 728 Gene3D Tetratricopeptide repeat domain 281 354 IPR011990 GO:0005515
Vimu10g00758 728 Gene3D Tetratricopeptide repeat domain 211 280 IPR011990 GO:0005515
Vimu10g00758 728 Gene3D Tetratricopeptide repeat domain 39 210 IPR011990 GO:0005515
Vimu10g00758 728 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 16 428 - -
Vimu10g00758 728 FunFam Pentatricopeptide repeat-containing protein At5g39710 237 343 - -
Vimu10g00758 728 SUPERFAMILY HCP-like 364 539 - -
Vimu10g00758 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Vimu10g00758 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 282 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00758 Vimu-Chr10 6638912 6641179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00758 474 705 Miscellaneous Gene Families AT4G11690 22.845 2.81e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00758 - - gmx:100794080 1197.96