Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00717 ATGGAGAAGAGTATATACACTTTTCTCACTGTGCACCGTTGGGAGTCACTGAACTGTATGAAATATAGATTGGCTTCCCTGAGGCCAGTTCATGGAAGGTTGGCTCTGAAATTTCTCAATTGGGTCATAAAGCAACCCAATTTAGAGCTAAAACATGTTACTCATATCATCTGCTGTACTACCCACATACTTGTTAGAGCTAGAATGTACAACTTTGCCAAAACAACCTTAAAGCAAATGTTACAACTGCCTATTGGTATGAACTCTGTCTTTTATGCTTTGATGGATACGTACCCCATTTGCAACTCAAACCCAGCTGTTTTTGACCTCCTGATTAGGGTTTGTTTGAGGGACAAGATGGTTGGAAAGGCTGTGCAGACTTTCTACTTTATGGGCTTTCGGGGACTGAAGCCGTCTGTATATACTTGTAACATGGTGTTGGGTTCCCTTGTGAAGGAGGAGAAAGTTGATATGTTTTGGTCCTTTTTCAAAGAGATGCTTACCAAAGGGATTTGTCCTAATGTTGCTACATTTAACATATTGCTGAATGCGTTGTGCGAACGGGGGAAGTTTAAAAGTGCTGGCTTTCTCTTGAAGAAAATGGAAGAAAGTGGTGTTTATCCGACTGTTGTCACTTACAATACCTTGCTTAATTGGTATTGCAAGAAAGGAAGGTACAAAGCAGCATCTGAGTTGATTGACTCCATGGCATCTAAGGGTATTGGGGCAGATGTTTGTACATATAATGTTTTGGTAGGGAATTTGTGCAAGGAAGGCAAGAGTGCAAAAGGTTATTTATTGTTGAAAAGGATGAGAAGGAAAATGGTGTATCCAAATGAGATAACTTATAATACTCTTATTAACGGATTTGTGAAGGAGGGGAAAATTGAAGTTGCTGCAAAAGTTTTTGATGAAATGTCATCATTTAATTTGTTACCTAACATTATCACTTACAATACTTTGATTGTTGGGCACTGTAGGATTGGCAACAATAGGGAGGCATTGAGATTGATGGATGGTATGGTATCATGTGGTTTAAAACCTAATGAAGTTACATATGGGGCTCTTTTGAATGGGCTATCCAAGCATGCTGAATTTGGACCGGTTTCTAGTATTCTTGAGAGAATGAGGATGGATGGGGTGGGAGTTGGTCACATTAGTTACTCTGCAATGATGGATGGATTGTGTAAGAATGGTAGGCTTGAAGAAGCTGTGCAGTTGTTGGATGATATGTTAAAAATTTCTGTTAGTCCCGATGTTGTTACATTTACGGTTCTCATAAATGGATTTTTCAGGGTGGGGAAGATAAATAATGCAAAGGAGATTATGTGTAAGATGTATAGGACTGGACTTGTGCCAAATAGTATTTTGTGTTCAACATTAATCTACAATTATTGCAAAATGGGATATTTAAAAGAGGCATTAAGTACTTATGCAATTATGAATCGTAGTGGTTATGCTGCCGATCACTTTACATGTAATGTGTTGGTTGCCGCTTTATGTAGATGTGGAAGACTTGAGGAGGCTGAGTATTTTATAGAACACATGAACAGAACTGGTCTTGATCCTAATTCCATTACCTTTGATTGTGTTATAAATGGTTACGGAAATTCTGGTGATGCGTTTAAAGCTTTTTCTGTGTTTGATAAAATGAATTGTTTAGGCCATTTGCCAAGTCAATTCACATATGGGGGTCTATTGAAAGCACTTTGCAGAAGTGGACATATTAATGAAGCATGGAAGTATTTCCATAGTCTTTGTTCTGTTCCTAATGCCGTTGATAATGTAATCTTCAACACAATGATTACTTCTACATGTAGATCAGGAAATTTATCTTATGCAATTGCCCTTATTAATGAGATGGTTTCAAATGATTTTCTGCCTGACAATTTTACATACACTAATATTATTACAGGGCTATGCAAGAATGGTAAAATAGTTGTTGCACTCCTTTTGTCAGGAAAGGCAATTGAAAAACGATTATTGTCTCCAAATCCTGCTATGTACACCGGCTTAGTCTATGGACTTCTTAAGCATGGACATTCAAGAGCAGCTTTCTATATTTTTGAAGAAATGCTAAGCAAAGGTGTGGAGCCTGATACTATAGCATTCAATGTGATTATAGATCAATACTTAAGGAAAGGGAAAATGTCGGAGGTCAATGATATTCTTTCAACAATGAAGAATAAAAATGTATGCTTCAATTTGGCTACTTACAACATCCTACTACATGGATATGCAAAGAGGAATGCAATGGCAAGATGTTTTATGTTATACAAAGACATGATCCGAAACGGTTTTCTACCAGATAAGTATTCATGGAACTCTCTTATTCTTGGGTATTGTAAGTCCAAATCATTTGATGTTGCTATTAAAATTTTAAGATGGATAACACTGAAAGGTTTCATAACAGATTGCTCTACATTTAACATGCTTATTTCCAAGTTCTGTGAAAGGAATAAGATGAAAATGGCCTCTGATCTGTTATATCAAATGAATCAGTTTACAATAATTCCCAATGTAGATACATACAATGCCCTTTTTAATGGACTCGTTAGAACTAGTGATTTTGATAAAGCCCATTGTGTTTTGCAAGACTTGTTGGAAAGTGGTTCTGTTCCTACAATTAAACAATATATTACTTTAATCAATGGTATGTGTAGAGTTGGGAACATAAAAGGAGCATTTAAACTTCAAGATGAAATGAAAACACATGGTGTCAGCTCCCACAATGTTGCAATGAGTGCTACTGTTAGAGGGCTTGCAAATTCAAAGAATATAGAAAAAGCTATTTGGGTTCTTGATTTGATGCTTGAGAGGCAAATCATTCCAACTGTTGCTACTTTCACTACATTAATGCATGTCTTTTGCGGAGAAGCTAATGTTGCAAAAGCTTTAGAATTGAGGAGCACAATGGAACGTTGTCATTTGAAGCTTGATGTTGTTGCGTATAATGTTCTTATATCTGGGCTTTGTGCTAGTGGAGATATTGAAGCAGCTTTTAAACTTTATGAAGAGATGAAACATAGAAATCTTTGGCCTAATACGTCTATATACATTGTTCTTATTGATTCTCTCTGTGCTGGAAATTATCATACTGAAAGTGAAAAACTTTTGAGGGACATACAAGCTAGGGAACTGGTTTCTTTTAATTCATGTGGAGGAACCAAAAGATTGAATGAATTATTGATTATTGCTAGGACAAAGTTAATTCATTTGAGAAACAAAATGAGAAGAAAGTTTGAATATGTGTTGACGGATGAGGCTGAACCAACAGTTTTGTTACTCATACAAATGCGATATTCCTATACGTTAAAATCCTTTGAAAGACACCTGCATCGGAAATCCTTGTATGCCTTGGGCTTTTGTTTAGAGTTTCAGCCGTGTTATGGAAAAATGAACACGGAGGATTTTGGTGTCAGACTTTTTGATGGGCACCACAACATGACAGTAGCAAATCAGTTTGGCATGGCCATGACAGAATTTGTAAACCTGATGGCACTGCTCTGCGTAAGGATGAAGAAGTCCCATGTCAGTGCAACCCAACCCCATCCGAGATGGATTTATATTTCAGGCCTTATCAGTACAGCTGGTAATAATTACTGGGATGTACCATTTCCAATTGATCAAGCTTCTATGACTATCCGTGATTCTTCTAGTGCTTCTCCCTTGACAGTGTTCTTAACCCAAGCTGTTCAAAAGGATTCAAATTCAAAGAATGAAAGAACTGAAGATCCTGAATTGAAATTGCTGCAACCTTACAAATGCTCGTGGGATAATGGGGACAATGCCACTTTACTGTGTAAGTTAGAGCTGGTTCAAGAATTACTGTGGAAATCTCTTGTTCCTTAA 3852 0.3699 MEKSIYTFLTVHRWESLNCMKYRLASLRPVHGRLALKFLNWVIKQPNLELKHVTHIICCTTHILVRARMYNFAKTTLKQMLQLPIGMNSVFYALMDTYPICNSNPAVFDLLIRVCLRDKMVGKAVQTFYFMGFRGLKPSVYTCNMVLGSLVKEEKVDMFWSFFKEMLTKGICPNVATFNILLNALCERGKFKSAGFLLKKMEESGVYPTVVTYNTLLNWYCKKGRYKAASELIDSMASKGIGADVCTYNVLVGNLCKEGKSAKGYLLLKRMRRKMVYPNEITYNTLINGFVKEGKIEVAAKVFDEMSSFNLLPNIITYNTLIVGHCRIGNNREALRLMDGMVSCGLKPNEVTYGALLNGLSKHAEFGPVSSILERMRMDGVGVGHISYSAMMDGLCKNGRLEEAVQLLDDMLKISVSPDVVTFTVLINGFFRVGKINNAKEIMCKMYRTGLVPNSILCSTLIYNYCKMGYLKEALSTYAIMNRSGYAADHFTCNVLVAALCRCGRLEEAEYFIEHMNRTGLDPNSITFDCVINGYGNSGDAFKAFSVFDKMNCLGHLPSQFTYGGLLKALCRSGHINEAWKYFHSLCSVPNAVDNVIFNTMITSTCRSGNLSYAIALINEMVSNDFLPDNFTYTNIITGLCKNGKIVVALLLSGKAIEKRLLSPNPAMYTGLVYGLLKHGHSRAAFYIFEEMLSKGVEPDTIAFNVIIDQYLRKGKMSEVNDILSTMKNKNVCFNLATYNILLHGYAKRNAMARCFMLYKDMIRNGFLPDKYSWNSLILGYCKSKSFDVAIKILRWITLKGFITDCSTFNMLISKFCERNKMKMASDLLYQMNQFTIIPNVDTYNALFNGLVRTSDFDKAHCVLQDLLESGSVPTIKQYITLINGMCRVGNIKGAFKLQDEMKTHGVSSHNVAMSATVRGLANSKNIEKAIWVLDLMLERQIIPTVATFTTLMHVFCGEANVAKALELRSTMERCHLKLDVVAYNVLISGLCASGDIEAAFKLYEEMKHRNLWPNTSIYIVLIDSLCAGNYHTESEKLLRDIQARELVSFNSCGGTKRLNELLIIARTKLIHLRNKMRRKFEYVLTDEAEPTVLLLIQMRYSYTLKSFERHLHRKSLYALGFCLEFQPCYGKMNTEDFGVRLFDGHHNMTVANQFGMAMTEFVNLMALLCVRMKKSHVSATQPHPRWIYISGLISTAGNNYWDVPFPIDQASMTIRDSSSASPLTVFLTQAVQKDSNSKNERTEDPELKLLQPYKCSWDNGDNATLLCKLELVQELLWKSLVP 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Vimu10g00717 1283 Gene3D Tetratricopeptide repeat domain 257 369 IPR011990 GO:0005515
Vimu10g00717 1283 Gene3D Tetratricopeptide repeat domain 815 924 IPR011990 GO:0005515
Vimu10g00717 1283 Gene3D Tetratricopeptide repeat domain 925 1057 IPR011990 GO:0005515
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 421 454 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 596 629 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 386 419 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 246 279 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 879 908 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 982 1012 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 141 175 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 561 587 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 843 875 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 668 701 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 177 210 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 281 314 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 316 350 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 211 244 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 491 524 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 738 770 IPR002885 -
Vimu10g00717 1283 NCBIfam pentatricopeptide repeat 526 559 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat 458 485 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat 561 585 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat 351 381 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat family 807 853 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat family 664 708 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat family 278 327 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat family 138 186 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat family 489 535 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat family 594 642 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat family 980 1027 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat family 208 257 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat family 735 783 IPR002885 -
Vimu10g00717 1283 Pfam PPR repeat family 386 431 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 104 138 IPR002885 -
Vimu10g00717 1283 Pfam Pentatricopeptide repeat domain 919 958 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 805 839 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 840 874 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 770 804 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 735 769 IPR002885 -
Vimu10g00717 1283 SUPERFAMILY HCP-like 530 702 - -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 980 1014 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 665 699 IPR002885 -
Vimu10g00717 1283 Gene3D Tetratricopeptide repeat domain 10 167 IPR011990 GO:0005515
Vimu10g00717 1283 Gene3D Tetratricopeptide repeat domain 591 652 IPR011990 GO:0005515
Vimu10g00717 1283 Gene3D Tetratricopeptide repeat domain 370 449 IPR011990 GO:0005515
Vimu10g00717 1283 Gene3D Tetratricopeptide repeat domain 168 240 IPR011990 GO:0005515
Vimu10g00717 1283 Pfam PPR repeat 871 903 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 875 909 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Vimu10g00717 1283 Gene3D Tetratricopeptide repeat domain 458 590 IPR011990 GO:0005515
Vimu10g00717 1283 Gene3D Tetratricopeptide repeat domain 653 800 IPR011990 GO:0005515
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Vimu10g00717 1283 PANTHER ATPASE EXPRESSION PROTEIN 3 244 592 - -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 594 628 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Vimu10g00717 1283 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00717 Vimu-Chr10 6228155 6233238 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00717 33 721 Glycosyltransferase AT1G05670 27.690 2.58e-84 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00717 - K17964 gmx:100817407 1860.5