Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00664 ATGTTCCCTCTCCGCCGCAAACTCATTTTCCTTTCCTTCCCCTCACACAGAACATTCCATATCTCTCCATTCCTTTCCCAGAACTTTCCTCAACATTCCCATTCCAATTCCAAGCCTCCCTCCCCCGACCTCCTCGACCGAATCTCCCGCCTCCTCCTCCTCCGCCGCCCTGCCTCCCTCAACGGCCTCCGCTTTCCCTTCTCAGACCCCCTCACCGATGCCCTCCTACGCCGCCTCCGCCTTCACCCCGCCGCCGCCCTCGCATTCTTCCAACTCGCCTCCCAGCAGCCCCACTACCGTCCCCACGCCACCTCCTTCTGCCTCCTCCTCCACATTCTCGCCCGCGCCAAGCTCTTCTCCGAAGCCCGCTCTCTCCTCCACCAACTCCTCTTCCTTCACTGCACCAACAACTTCCGTGCCTTCGCCGTCTGCCGCGACGTCGTTTCCGTCTACAAGGAATTTGGCTTTTCCCCCACCGTTTTTGACATGCTTCTCAAGGCTTTCGCTGAACGCGGCATGACGCGCCACGCACTCAACGTGTTCGACGAAATGAGCAGGCTCGGTAGGACCCCCTGCCTCAGGTCCTGCAATTGCCTGCTCGCTAGGCTGGTACGTGCCGGTGAAGTAGGCCAGGCGCTGACTGTTTTTGAGCAGGTTTTGAAGATGGGGATTGTGCCTGACGTTTTCATGATTAGTATTGTTGTGAATGCGCATTGTCGGGAAGGGAATGTGGATTGCGCTGAGAGGTTTGTGGAGAAGATGGTGAGGATGGGGTTTGAGGTTAATGTTATTGTGTACAATGCTTTGGTTGGAGGGTATGCTTGTAAGGGTGATGCGGGAGAAGCTGAGAGGGTGCTGGATTTAATGTCTAGGAAAGGGGTGGAGAGAAATGTGGTCACTTGGACTTTGTTGATGAAAGGTTACTGCAGGCAGGGAAGGGTGGATGAGGCCGAGAGGTTGCTTCGGAGAATGGAGGAGGATGAGGTGATTGTGGATGATCGCGTGTATGGTGTGCTGGTGAATGGGTATTGTCAGGTGGGGAAGATGGATGATGCGGTTAGGGTTCGAGATGAGATGGCAAGGGTGGGGTTGAAGGTGAATGTGTTTGTTTGTAATGCGTTGGTTAATGGCTACTGTAAGCAGGGTCGGATAAGAAAGGCCGAAGAGGTGTTTAGGGGAATGTTGGATTGGAATGTGAGACCGGATTGTTATAGCTATAATACGCTGTTGGATGGGTACTGCAGGGAAGGGAGAATGAGTGAGGCTTTGATGCTTTGTGAGGAGATGTTAAGGGAGGGAATTGATCCTTCGGTTGTGACCTATAATACGGTTCTCAAAGGGTTGGTTGATGTGGGGTCTTACGACGATGCTTTGAGCCTTTGGCGCTCGATGGTGGAACGAGATGTGGTGCCGAATGAAGTCAGCTGCTGTACTCTGCTTGATTGTTTTTTCAAAATGGGAGATTCTGATGGGGCTATGAAGCTTTGGAAAGAGATTTTGGGTCGGGGTTTTACTAATAGCACTGTTGCATTCAATACAATGATCGGTGGGCTTTGTAAGATGGGGAAAGTGGTGGAGGCAAAGGTTGTTTTTGATAGGATGAAGGAACTTGGATGCTCGCCTGACGAAATAACATATAGGACATTGAGTGATGGATATTGTAAAACTGGTAGTGTTATCGAAGCTTTTAGAATCAAAGATATGATGGAAAGACAAACAATTTCTCCTTCCATTGAAATGTACAATTCCCTTATTCATGGACTATTTAAGTCTAGGAAGTCAAGTGATGTTGCTGATCTTCTAGTTGAGTTGCGGACGAGAGGACTATCACCAGATACTGTTACCTATGGTACCCTTATTTACGGTTGGTGCAATGAAGGGAAGCTGGATAAAGCTTTTAATTTATATTTTGAGATGATCGAAAGAGGGTTTTCTCCTAATTTTGTGATATGTAGCAAAATAGTCAGCAGTCTTTATAAGAATGACAGAATCAATGAAGCAACTGTGATCCTAAGCAAGATGGTGGATTTTGATCTTCTTACAGTTCATAAATGTTCTGATAAGTCTGTTAAGAATGATTCCATAGGTCAAGAAGCTCAGAGAATTGCTGATTCTCTTGATAAAATTGCTATATGTAATTCTCTTGGTAGCAATATTGTGTACAACATAGCTATCTATGGTCTTGGCAAATCTGGGAAGATTGATGAAGCAAGAAGTGTTCTGTCAATTTTGTTATCTAGAGGTTTTCTTCCAGATAATTTCACATATGGTGCCTTAATTCATGCCTGTTCAGCTGCTGGTGATGTAGATGGTGCTTTCAACTTAAGGAATGAGATGCTGGAGAGAGGTCTTATTCCAAATATTACTACATATAATGCTTTAATAAATGGGTTATGCAAATTGGGAAATATGGAACGAGCACAGAGACTTTTCCGTAAACTTCCTCAAAAGGGCTTAGTTCCAAATGTCGTTACCTATAATATACTAATCAGTGGTTACCTTAGGATTGGGGACCTTAATGAAGCCTCTAACTTGAGAGAGAAGATGATTGAAGAAGGGATTTCTTGA 2568 0.4646 MFPLRRKLIFLSFPSHRTFHISPFLSQNFPQHSHSNSKPPSPDLLDRISRLLLLRRPASLNGLRFPFSDPLTDALLRRLRLHPAAALAFFQLASQQPHYRPHATSFCLLLHILARAKLFSEARSLLHQLLFLHCTNNFRAFAVCRDVVSVYKEFGFSPTVFDMLLKAFAERGMTRHALNVFDEMSRLGRTPCLRSCNCLLARLVRAGEVGQALTVFEQVLKMGIVPDVFMISIVVNAHCREGNVDCAERFVEKMVRMGFEVNVIVYNALVGGYACKGDAGEAERVLDLMSRKGVERNVVTWTLLMKGYCRQGRVDEAERLLRRMEEDEVIVDDRVYGVLVNGYCQVGKMDDAVRVRDEMARVGLKVNVFVCNALVNGYCKQGRIRKAEEVFRGMLDWNVRPDCYSYNTLLDGYCREGRMSEALMLCEEMLREGIDPSVVTYNTVLKGLVDVGSYDDALSLWRSMVERDVVPNEVSCCTLLDCFFKMGDSDGAMKLWKEILGRGFTNSTVAFNTMIGGLCKMGKVVEAKVVFDRMKELGCSPDEITYRTLSDGYCKTGSVIEAFRIKDMMERQTISPSIEMYNSLIHGLFKSRKSSDVADLLVELRTRGLSPDTVTYGTLIYGWCNEGKLDKAFNLYFEMIERGFSPNFVICSKIVSSLYKNDRINEATVILSKMVDFDLLTVHKCSDKSVKNDSIGQEAQRIADSLDKIAICNSLGSNIVYNIAIYGLGKSGKIDEARSVLSILLSRGFLPDNFTYGALIHACSAAGDVDGAFNLRNEMLERGLIPNITTYNALINGLCKLGNMERAQRLFRKLPQKGLVPNVVTYNILISGYLRIGDLNEASNLREKMIEEGIS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00664 855 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 15 467 - -
Vimu10g00664 855 Pfam PPR repeat 161 188 IPR002885 -
Vimu10g00664 855 Pfam PPR repeat 474 504 IPR002885 -
Vimu10g00664 855 SUPERFAMILY TPR-like 203 325 IPR011990 GO:0005515
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Vimu10g00664 855 Pfam PPR repeat 257 289 IPR002885 -
Vimu10g00664 855 Pfam PPR repeat 222 255 IPR002885 -
Vimu10g00664 855 Pfam PPR repeat 607 639 IPR002885 -
Vimu10g00664 855 Pfam PPR repeat 332 359 IPR002885 -
Vimu10g00664 855 Pfam PPR repeat 363 394 IPR002885 -
Vimu10g00664 855 Pfam PPR repeat 292 325 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Vimu10g00664 855 SUPERFAMILY HCP-like 722 852 - -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Vimu10g00664 855 Gene3D Tetratricopeptide repeat domain 562 712 IPR011990 GO:0005515
Vimu10g00664 855 Pfam PPR repeat family 786 832 IPR002885 -
Vimu10g00664 855 Pfam PPR repeat family 719 763 IPR002885 -
Vimu10g00664 855 Pfam PPR repeat family 507 555 IPR002885 -
Vimu10g00664 855 Pfam PPR repeat family 405 449 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Vimu10g00664 855 Gene3D Tetratricopeptide repeat domain 713 782 IPR011990 GO:0005515
Vimu10g00664 855 Gene3D Tetratricopeptide repeat domain 290 361 IPR011990 GO:0005515
Vimu10g00664 855 Gene3D Tetratricopeptide repeat domain 221 289 IPR011990 GO:0005515
Vimu10g00664 855 Gene3D Tetratricopeptide repeat domain 71 220 IPR011990 GO:0005515
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 577 611 IPR002885 -
Vimu10g00664 855 Gene3D Tetratricopeptide repeat domain 362 452 IPR011990 GO:0005515
Vimu10g00664 855 Gene3D Tetratricopeptide repeat domain 783 855 IPR011990 GO:0005515
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 822 855 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 507 541 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 717 751 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 612 646 IPR002885 -
Vimu10g00664 855 SUPERFAMILY TPR-like 367 537 IPR011990 GO:0005515
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 787 821 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 719 752 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 299 332 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 474 504 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 335 367 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 824 855 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 231 263 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 195 228 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 754 788 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 370 403 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 509 543 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 580 613 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 264 297 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 439 473 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 790 823 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 614 647 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 404 437 IPR002885 -
Vimu10g00664 855 NCBIfam pentatricopeptide repeat 160 188 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 542 576 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Vimu10g00664 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 752 786 IPR002885 -
Vimu10g00664 855 Gene3D Tetratricopeptide repeat domain 453 561 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00664 312 855 Glycosyltransferase AT1G05670 28.986 1.79e-65 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00664 - K17964 gmx:100811926 1374.38