Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00629 ATGGAAGGAGGTGTAGCAGAAGCCGATGTCTCTGCCTTCAGAGAATGTCTGTCTCTTTCATGGAAAAACCCTTTTGTTCTTCGTCTTGCTCTCTCTGCTGGAATTGGAGGCTTTCTCTTCGGCTACGATACTGGAGTCATATCAGGAGCTCTCTTGTATATCAGAGATGATTTCAAAGAGGTCGATACAAAGACTTGGCTTCAGGAAGCAATAGTGAGCATGGCACTTGCTGGAGCAATCATAGGAGCTTCAGTTGGCGGATGGATCAACGATCGATTTGGAAGAAAAAAGTCAATAGTTGTAGCAGATACCCTCTTTTTCATTGGGTCTGTCGTGATGGCTACTGCAATGAACCCAGCAACCTTAATTGTTGGTCGTGTTTTTGTTGGCCTTGGTGTTGGAATGGCTTCAATGGCATCCCCTTTATACATCTCAGAAGCATCACCAACAAGAGTTCGAGGAGCCCTTGTTAGTCTCAATGGACTTCTCATCACTGGAGGACAATTCCTTTCCTATGTCATCAACTTGGCCTTCACAACTGCACCAGGAACATGGAGGTGGATGTTGGGGGTTGCAGCAATACCAGCTCTGACACAAGTCATATTGATGGCTTTTCTCCCAGAATCACCTCGTTGGTTGTTCAGAAAGGGAAGAGAAGAAGAAGCTAAAGAAATTTTGAGGAAGATTTACCCTCCCCAACATGTTGAAGATGAGATAAATGCTCTGAAGGAATCAGTTGAAATGGAAGTGAGGGAAGCTGCAGCTTCTGACAAAGTCAGCATAGTGAAACTACTGAAAACGAAGACCGTGAGAAGAGGTCTCTATGCAGGAATGGGTCTTCAAATCTTCCAACAGTTTGTGGGAATCAACACTGTGATGTACTACAGCCCCACCATTGTTCAGTTGGCTGGTTTTGCGTCCAATAGGGTTGCACTGCTTCTTTCACTGGTTACTGCAGGGCTAAATGCACTTGGCTCTATTTTGAGCATATATTTCATTGACAAGACTGGGAGGAGGAAGCTTGTGCTGTTGAGTTTGTGTGGTGTAGTAGTTTCCCTTGTTGTTTTAACTGTTGTTTTTCATGAGACCACTACTCATTCCCCAATGGTTAGCACAATTGAAACCTCTCACTTCAACAATACCTGCCCTGGTTACACCATAGCTACCAACCCTTCTCAATGGGATTGCATGACATGCCTCAAGGCTTCTCCACAGTGTGGCTTTTGTGCTTCTAGAGCCAATAAGTTATTAGCCGGTGCATGCTTGATTTCAAATGAGAGAACAGAAGATGAGTGCAAGAAAGAGGAGAGGCAATGGTACAGTAGGGGATGTCCTAGTAAATATGGGTGGCTAGCTTTAATTGGGCTAGCACTGTACATCATATTCTTCTCACCAGGGATGGGAACAGTTCCATGGGTTGTCAACTCTGAGATCTATCCCTTAAGGTATAGAGGAATCTGTGGAGGAATAGCATCTACCTCCAATTGGGTTTCAAATCTCATTGTGGCTCAGTCCTTTCTCTCCTTGACACAAGCCATTGGAACCTCATCCACATTCATGATCTTCATATTCATCACTCTTGCAGCCATTATCTTTGTCATTATTTTCGTCCCAGAAACCAAAGGACTTCCAATTGAGCAAGTGGAGAACATGCTCCTAACAAGATCCTTGAACTTTAAGTTCTGGCAGACAAGTTCTCACTCTACTGAAATACCAGACCAAAAGCATCAATCAGTTTGA 1740 0.4402 MEGGVAEADVSAFRECLSLSWKNPFVLRLALSAGIGGFLFGYDTGVISGALLYIRDDFKEVDTKTWLQEAIVSMALAGAIIGASVGGWINDRFGRKKSIVVADTLFFIGSVVMATAMNPATLIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGLLITGGQFLSYVINLAFTTAPGTWRWMLGVAAIPALTQVILMAFLPESPRWLFRKGREEEAKEILRKIYPPQHVEDEINALKESVEMEVREAAASDKVSIVKLLKTKTVRRGLYAGMGLQIFQQFVGINTVMYYSPTIVQLAGFASNRVALLLSLVTAGLNALGSILSIYFIDKTGRRKLVLLSLCGVVVSLVVLTVVFHETTTHSPMVSTIETSHFNNTCPGYTIATNPSQWDCMTCLKASPQCGFCASRANKLLAGACLISNERTEDECKKEERQWYSRGCPSKYGWLALIGLALYIIFFSPGMGTVPWVVNSEIYPLRYRGICGGIASTSNWVSNLIVAQSFLSLTQAIGTSSTFMIFIFITLAAIIFVIIFVPETKGLPIEQVENMLLTRSLNFKFWQTSSHSTEIPDQKHQSV 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00629 579 FunFam Probable inositol transporter 2 20 381 - -
Vimu10g00629 579 Pfam Sugar (and other) transporter 30 365 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu10g00629 579 Pfam Sugar (and other) transporter 448 551 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu10g00629 579 FunFam Probable inositol transporter 2 421 560 - -
Vimu10g00629 579 NCBIfam sugar porter family MFS transporter 20 373 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g00629 579 PRINTS Sugar transporter signature 123 142 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g00629 579 PRINTS Sugar transporter signature 476 488 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g00629 579 PRINTS Sugar transporter signature 37 47 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g00629 579 PRINTS Sugar transporter signature 284 294 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g00629 579 PRINTS Sugar transporter signature 453 474 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g00629 579 CDD MFS_HMIT_like 32 539 - -
Vimu10g00629 579 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 12 566 - -
Vimu10g00629 579 ProSiteProfiles Major facilitator superfamily (MFS) profile. 29 541 IPR020846 GO:0022857
Vimu10g00629 579 SUPERFAMILY MFS general substrate transporter 19 549 IPR036259 -
Vimu10g00629 579 Gene3D MFS general substrate transporter like domains 21 395 IPR036259 -
Vimu10g00629 579 ProSitePatterns Sugar transport proteins signature 2. 128 153 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu10g00629 579 Gene3D MFS general substrate transporter like domains 436 557 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00629 Vimu-Chr10 5416471 5420728 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00629 1 574 Organic Solute Cotransporters AT1G30220 68.858 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00629 K08150 - gmx:100783605 995.342