Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00627 ATGATGGAAGCCATAGTGAGTACTGCAATTGCTGGAGCAATCATAGGGGCTTCAGTTGGAGGATGGATCAACGATCGATTTGGAAGAAAGAAAGGAATTGTTCTAGCAGATATCCTCTTTTTTGCTGGGTCTGCTATTATGGCTGCTGCGGGAAGCCCGACTGTTCTCATTGTGGGTCGTGTGTTCGTTGGCATTGGTGTTGGTATGGCTTCAATGGCATCGCCCCTCTACATTTCAGAGGCTTCACCAACCCGAGTAAGAGGAGCCCTTGTGAGTCTCAACAGTTTTCTCATCACTGGAGGACAGTTCCTTTCATACCTCATCAACTTGGCCTTCACCAAGGTGGGAAACTGTGCTGTCACTTTTCACTTTCTTACAAATTTTTCAGACATGCCTGATCTATGTTGGGGTTCATTAAATGGTTTTTTTCATACATGCAATTCCCTGAGTGTCTCTGAAGCTGTTCTCTAA 471 0.4522 MMEAIVSTAIAGAIIGASVGGWINDRFGRKKGIVLADILFFAGSAIMAAAGSPTVLIVGRVFVGIGVGMASMASPLYISEASPTRVRGALVSLNSFLITGGQFLSYLINLAFTKVGNCAVTFHFLTNFSDMPDLCWGSLNGFFHTCNSLSVSEAVL 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00627 156 SUPERFAMILY MFS general substrate transporter 4 123 IPR036259 -
Vimu10g00627 156 Gene3D MFS general substrate transporter like domains 1 132 IPR036259 -
Vimu10g00627 156 ProSitePatterns Sugar transport proteins signature 2. 62 87 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu10g00627 156 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 156 IPR020846 GO:0022857
Vimu10g00627 156 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 3 120 - -
Vimu10g00627 156 Pfam Sugar (and other) transporter 3 129 IPR005828 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00627 Vimu-Chr10 5361116 5362858 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00627 1 132 Organic Solute Cotransporters AT2G35740 56.818 1.36e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00627 K08150 - gmx:100796800 182.57