Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00622 GGACGTGTTTTGGGAGCACAATATACGGATATGGATCAGCATGAGGATGAAAGTAACAGCAAACAAGACGACGAGGAAGCTGTTGCTCGCCTTGAGGAAATAAAAAAGTCTGTTGAGGCAAAGATGACTTTACGACAAAACAATTTGAATCCTGAAAGGCCTGATCTTCTACCTTTGACAACTATTGCTAGGACAGATACTGCTTGCAATACAGGATTCTTAAGGACATTGGATTCCAGTATTAAGCGCAACACTGCAGTTATCAAAAAGCTGAAGCAGATCAACGAGGAACAGCGTGAATCTCTGATGGATGAGTTGAGAAGTGTCAACTTAAGCAAATTTGTCAGTGAAGCCGTGACTGCTATATGTGATGCCAAACTTAGAAGTTCTGATATACAAGCTGCAGTTCAGATTTGTTCTTTGCTTCATCAAAGGTACAAGGACTTTGCACCAAGCCTGATTCAAGGGCTTCTCAAAGTCTTCTCTCCTGGAAAACCTGGTGATGAGTCAGATGCTGATAGAAACTTGAAGGCAATGAAGAAGCGCAGCACCCTGAAACTTCTAATGGAACTTTTCTTTGTTGGAGTTATTGAAGATGGTGGCATTTTTATAAATATCATAAAAGATCTTACGAATGGGGAACAGCTGAAAGATCGGGATGCTGCACAAACAAGTTTGACCCTTCTTTCTAGTTTTGCTCGTCAGGGGAGAATTTTTCTTGGACTCTCTGTTAGTGGGCCGGAAATTCATGAAGAGTTTTTTAAAGGGCTTAACATCACAGCCGATCAGAAGAAAGTTTTCCGGAAAGCATGCTATTCCTTTTATGATGCTGCTGCTGAACTACTTCAGTCTGAGCATTCTTCACTTCGATTAATGGAGCATGAAAATTCAAAGATTTTGAACGCAAAAGGAGAGCTTAGTGATGAAAATATTGCTTCATATGAAAAGCTTCGTAAATCCTATGACCATTTATACAGAAATGTTTCATCATTAGCAGAAGCACTTGATATGCAGCCTCCTGTAATGCCAGAGGATGGACACACGACTAGGGTTACCAGTGGTGAGGAGGGTATTTCTTCTGCTTCTGGTAAAGATTCTTCTGCTGTTGAACCAATATGGGATGATGAAGATACAAGGACTTTCTATGAATGTTTACCTGATCTTAGAGCGTTTGTTCCTGCTGTGCTTTTGGGAGAAACAGAGCCAAAAAGCAGTGATCAATCTGCAAAGGGTCAAGACCAACCAACTGAAATAGTACCTGAATCAGACAAAAGTCAACAGACCACCCATGAAAGTGGAGAGATCTCTATAGAGTCTAATGCTTTGCCAGAGGCAGAAAGCACAGAAAGAGTGAAGGATAAGGAAGAAAAAGAAAAGTCTAAAGAATTGGACAGAGAGAAGGAAAAAGAAAAAGATAATGATAAAAAGGGTGAAAATGAAAAAGACAAACTCAGAAGTCTTGAAGGGACAAATTTGGATGCTCTACTGCAGAGGCTTCCTGGTTGTGTGAGCCGGGACCTTATAGATCAATTAACTGTTGAGTTCTGTTATCTGAACTCAAAATCAAATCGAAAAAAGCTTGTGAGGGCTCTGTTCAATGTGCCAAGGACATCTCTAGAACTGCTAGCATATTATTCACGCATGGTTGCCACACTCTCAACTTGTATGAAGGATGTCTCCTCCATTCTGTTACAAATGCTGGAGGAGGAATTCAATTTCTTAATAAATAAAAAGGACCAGATGAACATTGAGACAAAGATAAGGAACATCAGGTTCATTGGAGAACTTTGCAAGTTCAAAATTGCTTCTCCTGGCCTAGTCTTCAGTTGTTTGAAGGCCTGTTTAGATGATTTTACACATCACAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTGTATCGGTCTCCAGAAACTAGTATACGGATGGCTAACATGTTGGAGATACTGATGCGCTTGAAAAATGTAAAAAATTTGGATCCGAGACATAGCACTTTAGTGGAGAATGCATACTACCTTTGCAAACCACCAGAAAGATCTGCACGAGTAGCTAAAGTTCGTCCTCCATTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGACAAGTCTACCATTGAGCATGTGCTGAGGCAACTGCGCAAATTACCTTGGAATGAATGTGAGACATATCTTTTGAAGTGCTTCATGAAGGTCTACAAAGGAAAATATGGTCAGATCCACCTCATTGCATCTCTTGCTGCTGGATTAAGTCGCTATCATGATGAGTTTGCTGTAGCTATTGTTGATGAGGTTCTTGAGGAGATTAGAGTTGGGCTGGAGTTAAATGACTACAGTATGCAGCAAAGACGCATTGCTTACATGCGATTTTTAGGGGAGCTTTACAACTATGAGCATGTAGACTCTTCTGTTATTTTTGAGACACTTTATCTCATTCTCGTCTATGGTCATGGGACATCAGAGCAAGATGTACTTGATCCACCTGAAGATTGTTTTCGCATAAGGTTGATCATTACTCTACTTGAAACTTGTGGGCATTACTTTGATCGTGGCTCTTCTAAGAGGAAACTTGATCGGTTCCTAATACACTTCCAGAGGTATATTTTAAGCAAAGGAGCACTACCTCTGGACATTGAATTTGACTTACAGGATCTGTTTGCGGACTTACGACCCAATATGGCTCGTTACACTTCTATTGAAGAAGTGAATGCAGCTCTAGTAGAACTTGAGGAACATGATCGGATAGTTTCTGCTGATAAGGCTAGTGGTGAAAAACATTCTGACAATGAGAAGTCTTCAAGTAGGACCACTTCCACTACTACTGTGGTTGGCAATGGACAGAGCATTGATAATGGTACGGAGGAAAATGGAGTGCAAGATGATGTTAATGACAGTGAGACTGATTCAGGGAGTGACACAATTGATGTAGAGGGTCATGATGATGAAGAGTTGGATGAGGAGAATCATGATGATGGCTGTGAAACTGAGGATGATGAAGATGATGACGACGATGGGCCTGGACCTGCTACTGATGAGGAGGATGAAGTGCATGTGAGACAAAAAGTGACGGAGGTGGACCCTCTGGAAGAGGCTGATTTTGATCAGGAGCTCAAGGCTGTAGAGAGTATGGAACAGAGAAGGCAAGAACTACGGGGTCGTCCTACATTGAACATGATGATTCCAATGAATGTCTTTGAGGGATCAACCAAGGATCACCACGGGAGGGGAGTTAGTGGGGAAAGTGGTGATGAGGAACTGGATGAGGATACTGGTGGAAACAAAGAGGTTCAGGTGAGAGTTCTTGTGAAGCGTGGAAACAAGCAGCAAACAAAGCAGATGTTCATCCCCCGGAATTCCTCACTGGTGCAGAGTACAAAACAGAAAGAAGCAGCCGAGCTTCAAGAGAAAGAAGACATCAAGAGGCTTGTTTTGGAGTATAATGACAGAGAAGAGGAGGAGCTTAATGGATTAGGGACCCAGCCAGCAAACTGGATGCAGAGTGTAGGTAACAAGACTGGTGGCCGTGGTAGCACTTTGGAAGGAAACAGTGGCAGGGGTGGTGGATCAAGACATCGACATCATAACTATTCTGGCAGTGGAGTATATTATAGCAGAAGAAAGTGA 3639 0.418 GRVLGAQYTDMDQHEDESNSKQDDEEAVARLEEIKKSVEAKMTLRQNNLNPERPDLLPLTTIARTDTACNTGFLRTLDSSIKRNTAVIKKLKQINEEQRESLMDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQICSLLHQRYKDFAPSLIQGLLKVFSPGKPGDESDADRNLKAMKKRSTLKLLMELFFVGVIEDGGIFINIIKDLTNGEQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKKVFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEGISSASGKDSSAVEPIWDDEDTRTFYECLPDLRAFVPAVLLGETEPKSSDQSAKGQDQPTEIVPESDKSQQTTHESGEISIESNALPEAESTERVKDKEEKEKSKELDREKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLAYYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIASPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECETYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYSMQQRRIAYMRFLGELYNYEHVDSSVIFETLYLILVYGHGTSEQDVLDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFADLRPNMARYTSIEEVNAALVELEEHDRIVSADKASGEKHSDNEKSSSRTTSTTTVVGNGQSIDNGTEENGVQDDVNDSETDSGSDTIDVEGHDDEELDEENHDDGCETEDDEDDDDDGPGPATDEEDEVHVRQKVTEVDPLEEADFDQELKAVESMEQRRQELRGRPTLNMMIPMNVFEGSTKDHHGRGVSGESGDEELDEDTGGNKEVQVRVLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQPANWMQSVGNKTGGRGSTLEGNSGRGGGSRHRHHNYSGSGVYYSRRK 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00622 1212 Coils Coil 1038 1058 - -
Vimu10g00622 1212 Gene3D - 18 343 - -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 9 28 - -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 962 1015 - -
Vimu10g00622 1212 FunFam Regulator of nonsense transcripts UPF2 692 922 - -
Vimu10g00622 1212 SUPERFAMILY ARM repeat 89 208 IPR016024 -
Vimu10g00622 1212 Coils Coil 564 584 - -
Vimu10g00622 1212 Coils Coil 21 41 - -
Vimu10g00622 1212 SUPERFAMILY ARM repeat 490 684 IPR016024 -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 923 1039 - -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 445 484 - -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 352 366 - -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 1016 1039 - -
Vimu10g00622 1212 Gene3D - 452 694 - -
Vimu10g00622 1212 Pfam MIF4G domain 698 892 IPR003890 GO:0003723|GO:0005515
Vimu10g00622 1212 Pfam MIF4G domain 496 680 IPR003890 GO:0003723|GO:0005515
Vimu10g00622 1212 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 23 1160 IPR039762 GO:0000184
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 1 28 - -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 1071 1100 - -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 1164 1189 - -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 938 961 - -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 400 484 - -
Vimu10g00622 1212 SMART if4_15 493 681 IPR003890 GO:0003723|GO:0005515
Vimu10g00622 1212 SMART if4_15 696 897 IPR003890 GO:0003723|GO:0005515
Vimu10g00622 1212 SMART if4_15 81 303 IPR003890 GO:0003723|GO:0005515
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 401 436 - -
Vimu10g00622 1212 Pfam Up-frameshift suppressor 2 1016 1150 IPR007193 -
Vimu10g00622 1212 FunFam Regulator of nonsense transcripts UPF2 451 689 - -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 1157 1212 - -
Vimu10g00622 1212 FunFam Regulator of nonsense transcripts UPF2 18 343 - -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 923 937 - -
Vimu10g00622 1212 SUPERFAMILY ARM repeat 691 916 IPR016024 -
Vimu10g00622 1212 MobiDBLite consensus disorder prediction 335 369 - -
Vimu10g00622 1212 Coils Coil 451 473 - -
Vimu10g00622 1212 Gene3D - 695 921 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00622 K14327 - gmx:100786092 2072.74